Literature DB >> 19270080

A novel epigenetic mechanism in Drosophila somatic cells mediated by Piwi and piRNAs.

H Lin1, H Yin.   

Abstract

Small noncoding RNAs have emerged as key players in epigenetic regulation. Recently, a novel class of small RNAs that interact with Piwi proteins has been discovered in the mammalian and Drosophila germ line. These Piwi-interacting RNAs (piRNAs) represent a distinct small RNA pathway that is widely thought to function only in the germ line. In this chapter, we review our recent work with our collaborators on the epigenetic function of the Drosophila Piwi protein and its associated piRNAs in somatic cells. This work has revealed a novel epigenetic mechanism mediated by Piwi and its associated piRNAs in somatic cells that might also be applicable to the germ line. On the basis of these results, we propose a "Piwi-piRNA guidance hypothesis" for Piwi/piRNA-mediated epigenetic programming, in which the Piwi-piRNA complex serves as sequence-recognition machinery that recruits epigenetic effectors such as heterochromatin protein 1a (HP1a) to specific sites in the genome to execute epigenetic regulation.

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Year:  2009        PMID: 19270080      PMCID: PMC2810500          DOI: 10.1101/sqb.2008.73.056

Source DB:  PubMed          Journal:  Cold Spring Harb Symp Quant Biol        ISSN: 0091-7451


  43 in total

1.  Argonaute2 is the catalytic engine of mammalian RNAi.

Authors:  Jidong Liu; Michelle A Carmell; Fabiola V Rivas; Carolyn G Marsden; J Michael Thomson; Ji-Joon Song; Scott M Hammond; Leemor Joshua-Tor; Gregory J Hannon
Journal:  Science       Date:  2004-07-29       Impact factor: 47.728

2.  RITS acts in cis to promote RNA interference-mediated transcriptional and post-transcriptional silencing.

Authors:  Ken-ichi Noma; Tomoyasu Sugiyama; Hugh Cam; Andre Verdel; Martin Zofall; Songtao Jia; Danesh Moazed; Shiv I S Grewal
Journal:  Nat Genet       Date:  2004-10-10       Impact factor: 38.330

3.  RNA-dependent RNA polymerase is an essential component of a self-enforcing loop coupling heterochromatin assembly to siRNA production.

Authors:  Tomoyasu Sugiyama; Hugh Cam; André Verdel; Danesh Moazed; Shiv I S Grewal
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-22       Impact factor: 11.205

4.  Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs.

Authors:  Mohammad R Motamedi; André Verdel; Serafin U Colmenares; Scott A Gerber; Steven P Gygi; Danesh Moazed
Journal:  Cell       Date:  2004-12-17       Impact factor: 41.582

Review 5.  The role of the RNAi machinery in heterochromatin formation.

Authors:  Michael Wassenegger
Journal:  Cell       Date:  2005-07-15       Impact factor: 41.582

6.  The mammalian heterochromatin protein 1 binds diverse nuclear proteins through a common motif that targets the chromoshadow domain.

Authors:  Mark S Lechner; David C Schultz; Dmitri Negorev; Gerd G Maul; Frank J Rauscher
Journal:  Biochem Biophys Res Commun       Date:  2005-06-17       Impact factor: 3.575

7.  Role of the ZWILLE gene in the regulation of central shoot meristem cell fate during Arabidopsis embryogenesis.

Authors:  B Moussian; H Schoof; A Haecker; G Jürgens; T Laux
Journal:  EMBO J       Date:  1998-03-16       Impact factor: 11.598

8.  AGO1 defines a novel locus of Arabidopsis controlling leaf development.

Authors:  K Bohmert; I Camus; C Bellini; D Bouchez; M Caboche; C Benning
Journal:  EMBO J       Date:  1998-01-02       Impact factor: 11.598

9.  Distribution patterns of HP1, a heterochromatin-associated nonhistone chromosomal protein of Drosophila.

Authors:  T C James; J C Eissenberg; C Craig; V Dietrich; A Hobson; S C Elgin
Journal:  Eur J Cell Biol       Date:  1989-10       Impact factor: 4.492

10.  A novel class of evolutionarily conserved genes defined by piwi are essential for stem cell self-renewal.

Authors:  D N Cox; A Chao; J Baker; L Chang; D Qiao; H Lin
Journal:  Genes Dev       Date:  1998-12-01       Impact factor: 11.361

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  26 in total

1.  A Drosophila chromatin factor interacts with the Piwi-interacting RNA mechanism in niche cells to regulate germline stem cell self-renewal.

Authors:  Tora K Smulders-Srinivasan; Akos Szakmary; Haifan Lin
Journal:  Genetics       Date:  2010-07-20       Impact factor: 4.562

Review 2.  Small noncoding RNAs in the germline.

Authors:  Jonathan P Saxe; Haifan Lin
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-09-01       Impact factor: 10.005

Review 3.  Polarity in stem cell division: asymmetric stem cell division in tissue homeostasis.

Authors:  Yukiko M Yamashita; Hebao Yuan; Jun Cheng; Alan J Hunt
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-01       Impact factor: 10.005

Review 4.  Killer immunoglobulin-like receptor transcriptional regulation: a fascinating dance of multiple promoters.

Authors:  Frank Cichocki; Jeffrey S Miller; Stephen K Anderson
Journal:  J Innate Immun       Date:  2011-03-11       Impact factor: 7.349

5.  A major epigenetic programming mechanism guided by piRNAs.

Authors:  Xiao A Huang; Hang Yin; Sarah Sweeney; Debasish Raha; Michael Snyder; Haifan Lin
Journal:  Dev Cell       Date:  2013-02-21       Impact factor: 12.270

6.  Possible role of HIWI2 in modulating tight junction proteins in retinal pigment epithelial cells through Akt signaling pathway.

Authors:  Suganya Sivagurunathan; Karthikka Palanisamy; Jayamuruga Pandian Arunachalam; Subbulakshmi Chidambaram
Journal:  Mol Cell Biochem       Date:  2016-12-26       Impact factor: 3.396

7.  Function of Piwi, a nuclear Piwi/Argonaute protein, is independent of its slicer activity.

Authors:  Nicole Darricarrère; Na Liu; Toshiaki Watanabe; Haifan Lin
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-07       Impact factor: 11.205

8.  Tdrkh is essential for spermatogenesis and participates in primary piRNA biogenesis in the germline.

Authors:  Jonathan P Saxe; Mengjie Chen; Hongyu Zhao; Haifan Lin
Journal:  EMBO J       Date:  2013-05-28       Impact factor: 11.598

Review 9.  Untangling the web: the diverse functions of the PIWI/piRNA pathway.

Authors:  Sneha Ramesh Mani; Celina E Juliano
Journal:  Mol Reprod Dev       Date:  2013-06-27       Impact factor: 2.609

10.  Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila.

Authors:  Jian Lu; Andrew G Clark
Journal:  Genome Res       Date:  2009-11-30       Impact factor: 9.043

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