Literature DB >> 21669983

Small noncoding RNAs in the germline.

Jonathan P Saxe1, Haifan Lin.   

Abstract

Small noncoding RNAs have emerged as potent regulators of gene expression, especially in the germline. We review the biogenesis and regulatory function of three major small noncoding RNA pathways in the germline: The small interfering RNA (siRNA) pathway that leads to the degradation of target mRNAs, the microRNA (miRNA) pathway that mostly represses the translation of target mRNAs, and the newly discovered Piwi-interacting RNA (piRNA) pathway that appears to have diverse functions in epigenetic programming, transposon silencing, and the regulation of mRNA translation and stability. The siRNA and miRNA pathways are present in the germline as well as many somatic tissues, whereas the piRNA pathway is predominantly confined to the germline. Investigation of the three small RNA pathways has started to reveal a new dimension of gene regulation with defining roles in germline specification and development.

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Substances:

Year:  2011        PMID: 21669983      PMCID: PMC3181032          DOI: 10.1101/cshperspect.a002717

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  116 in total

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Authors:  Nicolas Robine; Nelson C Lau; Sudha Balla; Zhigang Jin; Katsutomo Okamura; Satomi Kuramochi-Miyagawa; Michael D Blower; Eric C Lai
Journal:  Curr Biol       Date:  2009-12-29       Impact factor: 10.834

3.  The miRNA pathway intrinsically controls self-renewal of Drosophila germline stem cells.

Authors:  Joseph K Park; Xiang Liu; Tamara J Strauss; Dennis M McKearin; Qinghua Liu
Journal:  Curr Biol       Date:  2007-02-22       Impact factor: 10.834

4.  Heterochromatic trans-inactivation of Drosophila white transgenes.

Authors:  L E Martin-Morris; A K Csink; D R Dorer; P B Talbert; S Henikoff
Journal:  Genetics       Date:  1997-10       Impact factor: 4.562

5.  Drosophila PIWI associates with chromatin and interacts directly with HP1a.

Authors:  Brent Brower-Toland; Seth D Findley; Ling Jiang; Li Liu; Hang Yin; Monica Dus; Pei Zhou; Sarah C R Elgin; Haifan Lin
Journal:  Genes Dev       Date:  2007-09-15       Impact factor: 11.361

6.  DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes.

Authors:  Satomi Kuramochi-Miyagawa; Toshiaki Watanabe; Kengo Gotoh; Yasushi Totoki; Atsushi Toyoda; Masahito Ikawa; Noriko Asada; Kanako Kojima; Yuka Yamaguchi; Takashi W Ijiri; Kenichiro Hata; En Li; Yoichi Matsuda; Tohru Kimura; Masaru Okabe; Yoshiyuki Sakaki; Hiroyuki Sasaki; Toru Nakano
Journal:  Genes Dev       Date:  2008-04-01       Impact factor: 11.361

7.  The TDRD9-MIWI2 complex is essential for piRNA-mediated retrotransposon silencing in the mouse male germline.

Authors:  Masanobu Shoji; Takashi Tanaka; Mihoko Hosokawa; Michael Reuter; Alexander Stark; Yuzuru Kato; Gen Kondoh; Katsuya Okawa; Takeshi Chujo; Tsutomu Suzuki; Kenichiro Hata; Sandra L Martin; Toshiaki Noce; Satomi Kuramochi-Miyagawa; Toru Nakano; Hiroyuki Sasaki; Ramesh S Pillai; Norio Nakatsuji; Shinichiro Chuma
Journal:  Dev Cell       Date:  2009-12       Impact factor: 12.270

8.  An endogenous small interfering RNA pathway in Drosophila.

Authors:  Benjamin Czech; Colin D Malone; Rui Zhou; Alexander Stark; Catherine Schlingeheyde; Monica Dus; Norbert Perrimon; Manolis Kellis; James A Wohlschlegel; Ravi Sachidanandam; Gregory J Hannon; Julius Brennecke
Journal:  Nature       Date:  2008-05-07       Impact factor: 49.962

9.  Mouse Piwi interactome identifies binding mechanism of Tdrkh Tudor domain to arginine methylated Miwi.

Authors:  Chen Chen; Jing Jin; D Andrew James; Melanie A Adams-Cioaba; Jin Gyoon Park; Yahong Guo; Enrico Tenaglia; Chao Xu; Gerald Gish; Jinrong Min; Tony Pawson
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-16       Impact factor: 11.205

10.  Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila.

Authors:  Julius Brennecke; Alexei A Aravin; Alexander Stark; Monica Dus; Manolis Kellis; Ravi Sachidanandam; Gregory J Hannon
Journal:  Cell       Date:  2007-03-08       Impact factor: 41.582

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  24 in total

Review 1.  Male germline control of transposable elements.

Authors:  Jianqiang Bao; Wei Yan
Journal:  Biol Reprod       Date:  2012-05-31       Impact factor: 4.285

Review 2.  Non-coding RNA regulation of synaptic plasticity and memory: implications for aging.

Authors:  Laurie R Earls; Joby J Westmoreland; Stanislav S Zakharenko
Journal:  Ageing Res Rev       Date:  2014-03-27       Impact factor: 10.895

Review 3.  Cancer/testis (CT) antigens, carcinogenesis and spermatogenesis.

Authors:  Yan-Ho Cheng; Elissa Wp Wong; C Yan Cheng
Journal:  Spermatogenesis       Date:  2011-07-01

Review 4.  Regulation of spermatogenesis by small non-coding RNAs: role of the germ granule.

Authors:  Sara de Mateo; Paolo Sassone-Corsi
Journal:  Semin Cell Dev Biol       Date:  2014-04-19       Impact factor: 7.727

Review 5.  Genetics of germ cell development.

Authors:  Bluma J Lesch; David C Page
Journal:  Nat Rev Genet       Date:  2012-10-09       Impact factor: 53.242

Review 6.  Epigenetics of major psychosis: progress, problems and perspectives.

Authors:  Viviane Labrie; Shraddha Pai; Arturas Petronis
Journal:  Trends Genet       Date:  2012-05-21       Impact factor: 11.639

Review 7.  Connecting the dots of RNA-directed DNA methylation in Arabidopsis thaliana.

Authors:  Pedro Costa-Nunes; Alexa Vitins; Olga Pontes
Journal:  Chromosome Res       Date:  2014-06       Impact factor: 5.239

Review 8.  Arginine methylation of RNA-binding proteins regulates cell function and differentiation.

Authors:  Ernest Blackwell; Stephanie Ceman
Journal:  Mol Reprod Dev       Date:  2012-01-23       Impact factor: 2.609

9.  The C. elegans SNAPc component SNPC-4 coats piRNA domains and is globally required for piRNA abundance.

Authors:  Dionna M Kasper; Guilin Wang; Kathryn E Gardner; Timothy G Johnstone; Valerie Reinke
Journal:  Dev Cell       Date:  2014-10-27       Impact factor: 12.270

Review 10.  Untangling the web: the diverse functions of the PIWI/piRNA pathway.

Authors:  Sneha Ramesh Mani; Celina E Juliano
Journal:  Mol Reprod Dev       Date:  2013-06-27       Impact factor: 2.609

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