Literature DB >> 19267467

Solvent-free lipid bilayer model using multiscale coarse-graining.

Sergei Izvekov1, Gregory A Voth.   

Abstract

The multiscale coarse-graining (MS-CG) approach developed in our previous work is extended here to model solvent-free lipid bilayers. The water (solvent) molecules are completely integrated out of the coarse-grained (CG) effective force field. The MS-CG potential, a sum of pairwise central terms, accurately approximates the many-body potential of mean force in the coarse-grained coordinates. It thus incorporates both energetic and entropic contributions. To improve the stability and elastic properties of the MS-CG simulated bilayer, an additional constraint was adopted: the partial virial associated with CG bilayer sites was matched to its corresponding atomistic value for each configuration of the system. The resulting solvent-free MS-CG model reproduces a liquid-state lipid bilayer with accurate structural and elastic properties. Finally, the solvent-free MS-CG model is used to simulate a very large, flat bilayer and two liposome geometries, demonstrating its greatly enhanced computational efficiency.

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Year:  2009        PMID: 19267467      PMCID: PMC2666921          DOI: 10.1021/jp810440c

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  46 in total

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8.  Multiscale coarse-graining of monosaccharides.

Authors:  Pu Liu; Sergei Izvekov; Gregory A Voth
Journal:  J Phys Chem B       Date:  2007-09-13       Impact factor: 2.991

9.  The multiscale coarse-graining method. I. A rigorous bridge between atomistic and coarse-grained models.

Authors:  W G Noid; Jhih-Wei Chu; Gary S Ayton; Vinod Krishna; Sergei Izvekov; Gregory A Voth; Avisek Das; Hans C Andersen
Journal:  J Chem Phys       Date:  2008-06-28       Impact factor: 3.488

10.  Lipid dynamics and domain formation in model membranes composed of ternary mixtures of unsaturated and saturated phosphatidylcholines and cholesterol.

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  29 in total

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Journal:  Proteins       Date:  2010-04

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Authors:  Emily M Curtis; Carol K Hall
Journal:  J Phys Chem B       Date:  2013-04-16       Impact factor: 2.991

8.  Multiscale coarse-graining of the protein energy landscape.

Authors:  Ronald D Hills; Lanyuan Lu; Gregory A Voth
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9.  A systematically coarse-grained solvent-free model for quantitative phospholipid bilayer simulations.

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Journal:  J Phys Chem B       Date:  2010-09-02       Impact factor: 2.991

10.  Physical Characterization of Triolein and Implications for Its Role in Lipid Droplet Biogenesis.

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Journal:  J Phys Chem B       Date:  2021-06-17       Impact factor: 2.991

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