Literature DB >> 19260673

Quantum-mechanical calculations of resonance Raman intensities: the weighted-gradient approximation.

Andrzej A Jarzecki1.   

Abstract

A framework of the weighted-gradient approach is developed for effective quantum-mechanical modeling of resonance Raman (RR) intensities with a view toward rationalizing enhancement patterns observed for histidine and tryptophan side chains. Unlike the single-state gradient approach, this new procedure utilizes the vertical gradients obtained for all computed excited states to produce an effective gradient and the RR intensity patterns for a particular frequency of the excitation photon. The dramatic spectral changes observed for the histidine ring upon its protonation, deprotonation, or deuterium substitution of exchangeable protons is well reproduced by this model. Spectral comparison for the tryptophan ring clearly demonstrated improved quality of the weighted-gradient over the single-state gradient approach. Computed spectra exemplify the potential application of this model to support vibrational studies of electronic and structural interactions of chromophores in proteins.

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Year:  2009        PMID: 19260673      PMCID: PMC2712662          DOI: 10.1021/jp8095715

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  10 in total

1.  Detection of Metal-Bound Histidine in Ultraviolet Resonance Raman Spectra: Superoxide Dismutase.

Authors:  Xiaojie Zhao; Daojing Wang; Thomas G. Spiro
Journal:  Inorg Chem       Date:  1998-10-19       Impact factor: 5.165

2.  Theory and method for calculating resonance Raman scattering from resonance polarizability derivatives.

Authors:  L Jensen; L L Zhao; J Autschbach; G C Schatz
Journal:  J Chem Phys       Date:  2005-11-01       Impact factor: 3.488

3.  Resonance Raman scattering of rhodamine 6G as calculated using time-dependent density functional theory.

Authors:  Lasse Jensen; George C Schatz
Journal:  J Phys Chem A       Date:  2006-05-11       Impact factor: 2.781

4.  Time dependent density functional theory investigation of the resonance Raman properties of the julolidinemalononitrile push-pull chromophore in various solvents.

Authors:  Julien Guthmuller; Benoît Champagne
Journal:  J Chem Phys       Date:  2007-10-28       Impact factor: 3.488

5.  Excited-state structural dynamics of cytosine from resonance Raman spectroscopy.

Authors:  Brant E Billinghurst; Glen R Loppnow
Journal:  J Phys Chem A       Date:  2006-02-23       Impact factor: 2.781

6.  Porphyrin distortion from resonance Raman intensities of out-of-plane modes: Computation and modeling of N-methylmesoporphyrin, a ferrochelatase transition state analog.

Authors:  Andrzej A Jarzecki; Thomas G Spiro
Journal:  J Phys Chem A       Date:  2005-01-27       Impact factor: 2.781

7.  Combined theoretical and experimental deep-UV resonance raman studies of substituted pyrenes.

Authors:  Johannes Neugebauer; Evert Jan Baerends; Evtim V Efremov; Freek Ariese; Cees Gooijer
Journal:  J Phys Chem A       Date:  2005-03-17       Impact factor: 2.781

8.  The first photoexcitation step of ruthenium-based models for artificial photosynthesis highlighted by resonance Raman spectroscopy.

Authors:  Carmen Herrmann; Johannes Neugebauer; Martin Presselt; Ute Uhlemann; Michael Schmitt; Sven Rau; Jürgen Popp; Markus Reiher
Journal:  J Phys Chem B       Date:  2007-05-10       Impact factor: 2.991

9.  Raman structural markers of tryptophan and histidine side chains in proteins.

Authors:  Hideo Takeuchi
Journal:  Biopolymers       Date:  2003       Impact factor: 2.505

10.  Analysis and prediction of absorption band shapes, fluorescence band shapes, resonance Raman intensities, and excitation profiles using the time-dependent theory of electronic spectroscopy.

Authors:  Taras Petrenko; Frank Neese
Journal:  J Chem Phys       Date:  2007-10-28       Impact factor: 3.488

  10 in total
  5 in total

1.  Mode recognition in UV resonance Raman spectra of imidazole: histidine monitoring in proteins.

Authors:  Gurusamy Balakrishnan; Andrzej A Jarzecki; Qiang Wu; Pawel M Kozlowski; Daojing Wang; Thomas G Spiro
Journal:  J Phys Chem B       Date:  2012-07-30       Impact factor: 2.991

2.  Quantum-mechanical study of lead coordination in sulfur-rich proteins: mode and structure recognition in UV resonance Raman spectra.

Authors:  Andrzej A Jarzęcki
Journal:  J Phys Chem A       Date:  2011-12-16       Impact factor: 2.781

3.  Mode-specific reorganization energies and ultrafast solvation dynamics of Tryptophan from Raman line-shape analysis.

Authors:  Erix A Milán-Garcés; Shreyas Kaptan; Mrinalini Puranik
Journal:  Biophys J       Date:  2013-07-02       Impact factor: 4.033

4.  General formulation of vibronic spectroscopy in internal coordinates.

Authors:  Alberto Baiardi; Julien Bloino; Vincenzo Barone
Journal:  J Chem Phys       Date:  2016-02-28       Impact factor: 3.488

5.  A robust and effective time-independent route to the calculation of Resonance Raman spectra of large molecules in condensed phases with the inclusion of Duschinsky, Herzberg-Teller, anharmonic, and environmental effects.

Authors:  Franco Egidi; Julien Bloino; Chiara Cappelli; Vincenzo Barone
Journal:  J Chem Theory Comput       Date:  2014-01-14       Impact factor: 6.006

  5 in total

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