Literature DB >> 22117527

Quantum-mechanical study of lead coordination in sulfur-rich proteins: mode and structure recognition in UV resonance Raman spectra.

Andrzej A Jarzęcki1.   

Abstract

Resonance Raman spectra are computed applying the weighted gradient methodology with CIS and DFT gradients to determine the characteristic spectral patterns for Hg(II) and Pb(II) loaded sulfur-rich proteins while excited to a characteristic LMCT electronic transition band. A framework of structure-spectrum relationships is established to assess lead coordination modes via vibrational spectroscopy. Illustrative calculations on Hg(II) complexes agree with experimental data demonstrating reliability and accuracy of the applied methodology. In contrast to Hg(II) complexes, a unique 3-center-4-electron hypervalent C(β)H···S interaction present in lead-sulfur complexes was established and suggested to play a key role in the strong preference for lead versus other metal ions in lead specific proteins such as PbrR691. The characteristic Pb-S symmetric stretching bands, predicted without additional refinements such as scaling of a force field or frequencies, are found around 238 cm(-1) for 3-coordinated lead-sulfur domains and around 228 cm(-1) for 4-coordinated lead-sulfur domains. These results present an experimental challenge for clear detection of lead coordination via solely UVRR spectroscopy. In addition to predicted UVRR spectra, UVRR excitation profiles for relevant vibrational bands of lead-sulfur domains are presented.

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Year:  2011        PMID: 22117527      PMCID: PMC3321649          DOI: 10.1021/jp2079132

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  21 in total

Review 1.  The biological chemistry of lead.

Authors:  H A Godwin
Journal:  Curr Opin Chem Biol       Date:  2001-04       Impact factor: 8.822

Review 2.  Disruption of the zinc finger domain: a common target that underlies many of the effects of lead.

Authors:  N H Zawia; T Crumpton; M Brydie; G R Reddy; M Razmiafshari
Journal:  Neurotoxicology       Date:  2000-12       Impact factor: 4.294

3.  Leucine 41 is a gate for water entry in the reduction of Clostridium pasteurianum rubredoxin.

Authors:  T Min; C E Ergenekan; M K Eidsness; T Ichiye; C Kang
Journal:  Protein Sci       Date:  2001-03       Impact factor: 6.725

4.  Lead-poisoned zinc fingers: quantum mechanical exploration of structure, coordination, and electronic excitations.

Authors:  Andrzej A Jarzecki
Journal:  Inorg Chem       Date:  2007-08-04       Impact factor: 5.165

Review 5.  Selective recognition of metal ions by metalloregulatory proteins.

Authors:  Peng R Chen; Chuan He
Journal:  Curr Opin Chem Biol       Date:  2008-03-04       Impact factor: 8.822

6.  Determination of iron coordination in nonheme iron proteins using laser-raman spectroscopy. II. Clostridium pasteurianum rubredoxin in aqueous solution.

Authors:  T V Long; T M Loer; J R Allkins; W Lovenberg
Journal:  J Am Chem Soc       Date:  1971-04-07       Impact factor: 15.419

7.  Peptidic models for the binding of Pb(II), Bi(III) and Cd(II) to mononuclear thiolate binding sites.

Authors:  Manolis Matzapetakis; Debdip Ghosh; Tsu-Chien Weng; James E Penner-Hahn; Vincent L Pecoraro
Journal:  J Biol Inorg Chem       Date:  2006-07-20       Impact factor: 3.358

8.  Reexamination of lead(II) coordination preferences in sulfur-rich sites: implications for a critical mechanism of lead poisoning.

Authors:  John S Magyar; Tsu-Chien Weng; Charlotte M Stern; David F Dye; Brian W Rous; John C Payne; Brian M Bridgewater; Ana Mijovilovich; Gerard Parkin; Jeffrey M Zaleski; James E Penner-Hahn; Hilary Arnold Godwin
Journal:  J Am Chem Soc       Date:  2005-07-06       Impact factor: 15.419

9.  The affinity of human erythrocyte porphobilinogen synthase for Zn2+ and Pb2+.

Authors:  T J Simons
Journal:  Eur J Biochem       Date:  1995-11-15

10.  Hyperfine-shifted 13C resonance assignments in an iron-sulfur protein with quantum chemical verification: aliphatic C-H···S 3-center-4-electron interactions.

Authors:  William M Westler; I-Jin Lin; András Perczel; Frank Weinhold; John L Markley
Journal:  J Am Chem Soc       Date:  2011-01-05       Impact factor: 15.419

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  1 in total

1.  High-Mobility p-Type Organic Semiconducting Interlayer Enhancing Efficiency and Stability of Perovskite Solar Cells.

Authors:  Mingyu Zhang; Jiayu Wang; Liang Li; Guanhaojie Zheng; Kuan Liu; Meng Qin; Huanping Zhou; Xiaowei Zhan
Journal:  Adv Sci (Weinh)       Date:  2017-04-21       Impact factor: 16.806

  1 in total

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