Literature DB >> 19252222

Active site of cytochrome cbb3.

Virve Rauhamäki1, Dmitry A Bloch, Michael I Verkhovsky, Mårten Wikström.   

Abstract

Cytochrome cbb(3) is the most distant member of the heme-copper oxidase family still retaining the following major feature typical of these enzymes: reduction of molecular oxygen to water coupled to proton translocation across the membrane. The thermodynamic properties of the six redox centers, five hemes and a copper ion, in cytochrome cbb(3) from Rhodobacter sphaeroides were studied using optical and EPR spectroscopy. The low spin heme b in the catalytic subunit was shown to have the highest midpoint redox potential (E(m)(,7) +418 mV), whereas the three hemes c in the two other subunits titrated with apparent midpoint redox potentials of +351, +320, and +234 mV. The active site high spin heme b(3) has a very low potential (E(m)(,7) -59 mV) as opposed to the copper center (Cu(B)), which has a high potential (E(m)(,7) +330 mV). The EPR spectrum of the ferric heme b(3) has rhombic symmetry. To explain the origins of the rhombicity, the Glu-383 residue located on the proximal side of heme b(3) was mutated to aspartate and to glutamine. The latter mutation caused a 10 nm blue shift in the optical reduced minus oxidized heme b(3) spectrum, and a dramatic change of the EPR signal toward more axial symmetry, whereas mutation to aspartate had far less severe consequences. These results strongly suggest that Glu-383 is involved in hydrogen bonding to the proximal His-405 ligand of heme b(3), a unique interaction among heme-copper oxidases.

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Year:  2009        PMID: 19252222      PMCID: PMC2670135          DOI: 10.1074/jbc.M808839200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  41 in total

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Authors:  M M Pereira; M Santana; M Teixeira
Journal:  Biochim Biophys Acta       Date:  2001-06-01

2.  The X-ray crystal structures of wild-type and EQ(I-286) mutant cytochrome c oxidases from Rhodobacter sphaeroides.

Authors:  Margareta Svensson-Ek; Jeff Abramson; Gisela Larsson; Susanna Törnroth; Peter Brzezinski; So Iwata
Journal:  J Mol Biol       Date:  2002-08-09       Impact factor: 5.469

Review 3.  Redox and redox-coupled processes of heme proteins and enzymes at electrochemical interfaces.

Authors:  Daniel H Murgida; Peter Hildebrandt
Journal:  Phys Chem Chem Phys       Date:  2005-08-31       Impact factor: 3.676

4.  Electrostatic interactions between FeS clusters in NADH:ubiquinone oxidoreductase (Complex I) from Escherichia coli.

Authors:  Liliya Euro; Dmitry A Bloch; Mårten Wikström; Michael I Verkhovsky; Marina Verkhovskaya
Journal:  Biochemistry       Date:  2008-02-13       Impact factor: 3.162

5.  The assignment of the 655 nm spectral band of cytochrome oxidase.

Authors:  R Mitchell; P Mitchell; P R Rich
Journal:  FEBS Lett       Date:  1991-03-25       Impact factor: 4.124

6.  Identification of a histidine-tyrosine cross-link in the active site of the cbb3-type cytochrome c oxidase from Rhodobacter sphaeroides.

Authors:  Virve Rauhamäki; Marc Baumann; Rabah Soliymani; Anne Puustinen; Mårten Wikström
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-23       Impact factor: 11.205

7.  Structure at 2.8 A resolution of cytochrome c oxidase from Paracoccus denitrificans.

Authors:  S Iwata; C Ostermeier; B Ludwig; H Michel
Journal:  Nature       Date:  1995-08-24       Impact factor: 49.962

8.  Molecular and spectroscopic analysis of the cytochrome cbb(3) oxidase from Pseudomonas stutzeri.

Authors:  Robert S Pitcher; Myles R Cheesman; Nicholas J Watmough
Journal:  J Biol Chem       Date:  2002-06-17       Impact factor: 5.157

9.  The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A.

Authors:  T Tsukihara; H Aoyama; E Yamashita; T Tomizaki; H Yamaguchi; K Shinzawa-Itoh; R Nakashima; R Yaono; S Yoshikawa
Journal:  Science       Date:  1996-05-24       Impact factor: 47.728

10.  A novel cytochrome c oxidase from Rhodobacter sphaeroides that lacks CuA.

Authors:  J A García-Horsman; E Berry; J P Shapleigh; J O Alben; R B Gennis
Journal:  Biochemistry       Date:  1994-03-15       Impact factor: 3.162

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  15 in total

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Authors:  Virve Rauhamäki; Dmitry A Bloch; Mårten Wikström
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-23       Impact factor: 11.205

2.  Disparate pathways for the biogenesis of cytochrome oxidases in Bradyrhizobium japonicum.

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Journal:  J Biol Chem       Date:  2010-03-24       Impact factor: 5.157

Review 3.  Architecture of bacterial respiratory chains.

Authors:  Ville R I Kaila; Mårten Wikström
Journal:  Nat Rev Microbiol       Date:  2021-01-12       Impact factor: 60.633

4.  Insights Into How Heme Reduction Potentials Modulate Enzymatic Activities of a Myoglobin-based Functional Oxidase.

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Journal:  Angew Chem Int Ed Engl       Date:  2017-05-04       Impact factor: 15.336

5.  Heme redox potentials hold the key to reactivity differences between nitric oxide reductase and heme-copper oxidase.

Authors:  Ambika Bhagi-Damodaran; Julian H Reed; Qianhong Zhu; Yelu Shi; Parisa Hosseinzadeh; Braddock A Sandoval; Kevin A Harnden; Shuyan Wang; Madeline R Sponholtz; Evan N Mirts; Sudharsan Dwaraknath; Yong Zhang; Pierre Moënne-Loccoz; Yi Lu
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-25       Impact factor: 11.205

6.  Using Biosynthetic Models of Heme-Copper Oxidase and Nitric Oxide Reductase in Myoglobin to Elucidate Structural Features Responsible for Enzymatic Activities.

Authors:  Ambika Bhagi-Damodaran; Igor Petrik; Yi Lu
Journal:  Isr J Chem       Date:  2016-09-16       Impact factor: 3.333

7.  The putative assembly factor CcoH is stably associated with the cbb3-type cytochrome oxidase.

Authors:  Grzegorz Pawlik; Carmen Kulajta; Ilie Sachelaru; Sebastian Schröder; Barbara Waidner; Petra Hellwig; Fevzi Daldal; Hans-Georg Koch
Journal:  J Bacteriol       Date:  2010-10-15       Impact factor: 3.490

Review 8.  Bacterial adaptation of respiration from oxic to microoxic and anoxic conditions: redox control.

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9.  Structural alterations in a component of cytochrome c oxidase and molecular evolution of pathogenic Neisseria in humans.

Authors:  Marina Aspholm; Finn Erik Aas; Odile B Harrison; Diana Quinn; Ashild Vik; Raimonda Viburiene; Tone Tønjum; James Moir; Martin C J Maiden; Michael Koomey
Journal:  PLoS Pathog       Date:  2010-08-19       Impact factor: 6.823

Review 10.  Synthetic Fe/Cu Complexes: Toward Understanding Heme-Copper Oxidase Structure and Function.

Authors:  Suzanne M Adam; Gayan B Wijeratne; Patrick J Rogler; Daniel E Diaz; David A Quist; Jeffrey J Liu; Kenneth D Karlin
Journal:  Chem Rev       Date:  2018-10-29       Impact factor: 60.622

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