Literature DB >> 19249097

Occurrence of DNA methylation in Daphnia magna and influence of multigeneration Cd exposure.

Michiel B Vandegehuchte1, Tina Kyndt, Bartel Vanholme, Annelies Haegeman, Godelieve Gheysen, Colin R Janssen.   

Abstract

Most of the research on the epigenetic phenomenon of DNA methylation has been performed with vertebrates and plants. Knowledge on DNA methylation in Daphnia magna, a key test organism in aquatic toxicology, is completely lacking. Through epigenetic inheritance, effects of transient chemical exposure could be transferred to non-exposed generations, which could have a major impact on ecological risk assessment procedures. In this study, we determined if CpG methylation occurs in D. magna and if this can be influenced by exposure to toxic substances. Homologs of human DNA methyltransferases DNMT1, DNMT2 and DNMT3A were found in the partially available D. magna genome. Using an optimized "Amplification of Intermethylated Sites (AIMS)" technique, two methylated fragments were discovered in D. magna DNA. No homology was found for these sequences. The methylation and the D. magna origin of the fragments were confirmed with Southern analysis. This optimized AIMS technique was then applied to DNA of D. magna which were exposed to 180 microg/L Cd for two generations. Exposure resulted in a significant decrease in reproduction. The same methylated fragments with the same band intensity were observed in DNA of both non-exposed and exposed daphnids. As such, it could not be demonstrated that Cd exposure altered DNA methylation. However, the presence of DNA methylation in D. magna shows that potentially epigenetic effects may occur in this species.

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Year:  2009        PMID: 19249097     DOI: 10.1016/j.envint.2009.01.002

Source DB:  PubMed          Journal:  Environ Int        ISSN: 0160-4120            Impact factor:   9.621


  24 in total

1.  epiGBS: reference-free reduced representation bisulfite sequencing.

Authors:  Thomas P van Gurp; Niels C A M Wagemaker; Björn Wouters; Philippine Vergeer; Joop N J Ouborg; Koen J F Verhoeven
Journal:  Nat Methods       Date:  2016-02-08       Impact factor: 28.547

Review 2.  Epigenetics and its implications for ecotoxicology.

Authors:  Michiel B Vandegehuchte; Colin R Janssen
Journal:  Ecotoxicology       Date:  2011-03-22       Impact factor: 2.823

Review 3.  The expanding epigenetic landscape of non-model organisms.

Authors:  Roberto Bonasio
Journal:  J Exp Biol       Date:  2015-01-01       Impact factor: 3.312

4.  Bi-directional effects of vitamin B12 and methotrexate on Daphnia magna fitness and genomic methylation.

Authors:  Fitore Kusari; Alan M O'Doherty; Nikolas J Hodges; Marcin W Wojewodzic
Journal:  Sci Rep       Date:  2017-09-19       Impact factor: 4.379

5.  Inhibition of DNA methylation attenuates low-dose cadmium-induced cardiac contractile and intracellular Ca(2+) anomalies.

Authors:  Subat Turdi; Weixia Sun; Yi Tan; Xiaohui Yang; Lu Cai; Jun Ren
Journal:  Clin Exp Pharmacol Physiol       Date:  2013-10       Impact factor: 2.557

6.  Genome-Wide DNA Methylation and RNA Analysis Reveal Potential Mechanism of Resistance to Streptococcus agalactiae in GIFT Strain of Nile Tilapia (Oreochromis niloticus ).

Authors:  Qiaomu Hu; Qiuwei Ao; Yun Tan; Xi Gan; Yongju Luo; Jiajie Zhu
Journal:  J Immunol       Date:  2020-04-24       Impact factor: 5.422

7.  DNA methylation patterns provide insight into epigenetic regulation in the Pacific oyster (Crassostrea gigas).

Authors:  Mackenzie R Gavery; Steven B Roberts
Journal:  BMC Genomics       Date:  2010-08-27       Impact factor: 3.969

Review 8.  Effect-based tools for monitoring and predicting the ecotoxicological effects of chemicals in the aquatic environment.

Authors:  Richard E Connon; Juergen Geist; Inge Werner
Journal:  Sensors (Basel)       Date:  2012-09-18       Impact factor: 3.576

9.  The Epigenetic Repertoire of Daphnia magna Includes Modified Histones.

Authors:  Nicole F Robichaud; Jeanette Sassine; Margaret J Beaton; Vett K Lloyd
Journal:  Genet Res Int       Date:  2012-04-04

10.  Daphnia as an emerging epigenetic model organism.

Authors:  Kami D M Harris; Nicholas J Bartlett; Vett K Lloyd
Journal:  Genet Res Int       Date:  2012-01-29
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