Literature DB >> 25568458

The expanding epigenetic landscape of non-model organisms.

Roberto Bonasio1.   

Abstract

Epigenetics studies the emergence of different phenotypes from a single genotype. Although these processes are essential to cellular differentiation and transcriptional memory, they are also widely used in all branches of the tree of life by organisms that require plastic but stable adaptation to their physical and social environment. Because of the inherent flexibility of epigenetic regulation, a variety of biological phenomena can be traced back to evolutionary adaptations of few conserved molecular pathways that converge on chromatin. For these reasons chromatin biology and epigenetic research have a rich history of chasing discoveries in a variety of model organisms, including yeast, flies, plants and humans. Many more fascinating examples of epigenetic plasticity lie outside the realm of model organisms and have so far been only sporadically investigated at a molecular level; however, recent progress on sequencing technology and genome editing tools have begun to blur the lines between model and non-model organisms, opening numerous new avenues for investigation. Here, I review examples of epigenetic phenomena in non-model organisms that have emerged as potential experimental systems, including social insects, fish and flatworms, and are becoming accessible to molecular approaches.
© 2015. Published by The Company of Biologists Ltd.

Entities:  

Keywords:  Chromatin; Epigenetics; Genomics; Polyphenism

Mesh:

Year:  2015        PMID: 25568458      PMCID: PMC4286706          DOI: 10.1242/jeb.110809

Source DB:  PubMed          Journal:  J Exp Biol        ISSN: 0022-0949            Impact factor:   3.312


  109 in total

Review 1.  Protein modules that manipulate histone tails for chromatin regulation.

Authors:  R Marmorstein
Journal:  Nat Rev Mol Cell Biol       Date:  2001-06       Impact factor: 94.444

Review 2.  Epigenetic regulation of cellular memory by the Polycomb and Trithorax group proteins.

Authors:  Leonie Ringrose; Renato Paro
Journal:  Annu Rev Genet       Date:  2004       Impact factor: 16.830

3.  Social descent with territory loss causes rapid behavioral, endocrine and transcriptional changes in the brain.

Authors:  Karen P Maruska; Lisa Becker; Anoop Neboori; Russell D Fernald
Journal:  J Exp Biol       Date:  2013-06-20       Impact factor: 3.312

4.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

Review 5.  X-inactivation, imprinting, and long noncoding RNAs in health and disease.

Authors:  Jeannie T Lee; Marisa S Bartolomei
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

6.  Histone methylation regulates memory formation.

Authors:  Swati Gupta; Se Y Kim; Sonja Artis; David L Molfese; Armin Schumacher; J David Sweatt; Richard E Paylor; Farah D Lubin
Journal:  J Neurosci       Date:  2010-03-10       Impact factor: 6.167

Review 7.  Sirtuins as regulators of metabolism and healthspan.

Authors:  Riekelt H Houtkooper; Eija Pirinen; Johan Auwerx
Journal:  Nat Rev Mol Cell Biol       Date:  2012-03-07       Impact factor: 94.444

8.  A chromatin link to caste identity in the carpenter ant Camponotus floridanus.

Authors:  Daniel F Simola; Chaoyang Ye; Navdeep S Mutti; Kelly Dolezal; Roberto Bonasio; Jürgen Liebig; Danny Reinberg; Shelley L Berger
Journal:  Genome Res       Date:  2012-12-03       Impact factor: 9.043

9.  Rapid behavioral and genomic responses to social opportunity.

Authors:  Sabrina S Burmeister; Erich D Jarvis; Russell D Fernald
Journal:  PLoS Biol       Date:  2005-10-18       Impact factor: 8.029

10.  Epigenetic modification and inheritance in sexual reversal of fish.

Authors:  Changwei Shao; Qiye Li; Songlin Chen; Pei Zhang; Jinmin Lian; Qiaomu Hu; Bing Sun; Lijun Jin; Shanshan Liu; Zongji Wang; Hongmei Zhao; Zonghui Jin; Zhuo Liang; Yangzhen Li; Qiumei Zheng; Yong Zhang; Jun Wang; Guojie Zhang
Journal:  Genome Res       Date:  2014-02-02       Impact factor: 9.043

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  14 in total

1.  Inquiline social parasites as tools to unlock the secrets of insect sociality.

Authors:  Alessandro Cini; Seirian Sumner; Rita Cervo
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-04-01       Impact factor: 6.237

2.  Robust DNA Methylation in the Clonal Raider Ant Brain.

Authors:  Romain Libbrecht; Peter Robert Oxley; Laurent Keller; Daniel Jan Christoph Kronauer
Journal:  Curr Biol       Date:  2016-01-21       Impact factor: 10.834

Review 3.  The impact of epigenetic information on genome evolution.

Authors:  Soojin V Yi; Michael A D Goodisman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-04-19       Impact factor: 6.671

Review 4.  Parent-of-origin effects, allele-specific expression, genomic imprinting and paternal manipulation in social insects.

Authors:  Benjamin P Oldroyd; Boris Yagound
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-04-19       Impact factor: 6.671

Review 5.  Monarch Butterfly Migration Moving into the Genetic Era.

Authors:  Christine Merlin; Samantha E Iiams; Aldrin B Lugena
Journal:  Trends Genet       Date:  2020-07-24       Impact factor: 11.821

Review 6.  Epigenetics as an answer to Darwin's "special difficulty," Part 2: natural selection of metastable epialleles in honeybee castes.

Authors:  Douglas M Ruden; Pablo E Cingolani; Arko Sen; Wen Qu; Luan Wang; Marie-Claude Senut; Mark D Garfinkel; Vincent E Sollars; Xiangyi Lu
Journal:  Front Genet       Date:  2015-02-24       Impact factor: 4.599

7.  Mercury-induced epigenetic transgenerational inheritance of abnormal neurobehavior is correlated with sperm epimutations in zebrafish.

Authors:  Michael J Carvan; Thomas A Kalluvila; Rebekah H Klingler; Jeremy K Larson; Matthew Pickens; Francisco X Mora-Zamorano; Victoria P Connaughton; Ingrid Sadler-Riggleman; Daniel Beck; Michael K Skinner
Journal:  PLoS One       Date:  2017-05-02       Impact factor: 3.240

8.  Differential DNA methylation in somatic and sperm cells of hatchery vs wild (natural-origin) steelhead trout populations.

Authors:  Eric Nilsson; Ingrid Sadler-Riggleman; Daniel Beck; Michael K Skinner
Journal:  Environ Epigenet       Date:  2021-05-19

Review 9.  Another Round of "Clue" to Uncover the Mystery of Complex Traits.

Authors:  Shefali Setia Verma; Marylyn D Ritchie
Journal:  Genes (Basel)       Date:  2018-01-25       Impact factor: 4.096

Review 10.  Environmental epigenetics in zebrafish.

Authors:  Vincenzo Cavalieri; Giovanni Spinelli
Journal:  Epigenetics Chromatin       Date:  2017-10-05       Impact factor: 4.954

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