Literature DB >> 21441515

Transcription antitermination by a phosphorylated response regulator and cobalamin-dependent termination at a B₁₂ riboswitch contribute to ethanolamine utilization in Enterococcus faecalis.

Kris Ann Baker1, Marta Perego.   

Abstract

The ability of bacteria to utilize ethanolamine (EA) as a carbon and nitrogen source may confer an advantage for survival, colonization, and pathogenicity in the human intestinal tract. Enterococcus faecalis, a Gram-positive human commensal organism, depends on a two-component signaling system (TCS-17) for sensing EA and regulating the expression of the ethanolamine utilization genes. Multiple promoters participate in eut gene expression in the presence of EA as the sole carbon source and cobalamin (CoB12), an essential cofactor in the enzymatic degradation process. By means of in vivo and in vitro approaches, this study characterized the transcriptional activity identified in the eutT-eutG intergenic region of the E. faecalis eut cluster. Two novel promoters in this region were shown to be active in vivo. The distal P2-1 promoter was associated with a B12 riboswitch that terminated transcription in the presence of CoB12. Transcription elongation from the proximal P2-2 promoter was regulated by antitermination mediated by the phosphorylated form of the response regulator of TCS-17 (RR17). 3'-Rapid amplification of cDNA ends (RACE) analyses of the terminated RNA products allowed precise identification of the hairpin loop structures involved in termination/antitermination. The results uncovered the role of the B12 riboswitch and RR17 in eut gene expression, adding to the complexity of this regulatory pathway and extending the knowledge of possible means of transcription regulation in Gram-positive organisms.

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Year:  2011        PMID: 21441515      PMCID: PMC3133151          DOI: 10.1128/JB.00217-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  42 in total

Review 1.  ANTAR: an RNA-binding domain in transcription antitermination regulatory proteins.

Authors:  Chengyi J Shu; Igor B Zhulin
Journal:  Trends Biochem Sci       Date:  2002-01       Impact factor: 13.807

2.  Prediction of rho-independent transcriptional terminators in Escherichia coli.

Authors:  E A Lesnik; R Sampath; H B Levene; T J Henderson; J A McNeil; D J Ecker
Journal:  Nucleic Acids Res       Date:  2001-09-01       Impact factor: 16.971

3.  Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis.

Authors:  I T Paulsen; L Banerjei; G S A Myers; K E Nelson; R Seshadri; T D Read; D E Fouts; J A Eisen; S R Gill; J F Heidelberg; H Tettelin; R J Dodson; L Umayam; L Brinkac; M Beanan; S Daugherty; R T DeBoy; S Durkin; J Kolonay; R Madupu; W Nelson; J Vamathevan; B Tran; J Upton; T Hansen; J Shetty; H Khouri; T Utterback; D Radune; K A Ketchum; B A Dougherty; C M Fraser
Journal:  Science       Date:  2003-03-28       Impact factor: 47.728

Review 4.  Two-component signal transduction in Enterococcus faecalis.

Authors:  Lynn Hancock; Marta Perego
Journal:  J Bacteriol       Date:  2002-11       Impact factor: 3.490

5.  Novel small RNA-encoding genes in the intergenic regions of Escherichia coli.

Authors:  L Argaman; R Hershberg; J Vogel; G Bejerano; E G Wagner; H Margalit; S Altuvia
Journal:  Curr Biol       Date:  2001-06-26       Impact factor: 10.834

6.  Clinical prevalence, antimicrobial susceptibility, and geographic resistance patterns of enterococci: results from the SENTRY Antimicrobial Surveillance Program, 1997-1999.

Authors:  D E Low; N Keller; A Barth; R N Jones
Journal:  Clin Infect Dis       Date:  2001-05-15       Impact factor: 9.079

Review 7.  Carbon catabolite repression in bacteria: choice of the carbon source and autoregulatory limitation of sugar utilization.

Authors:  Reinhold Brückner; Fritz Titgemeyer
Journal:  FEMS Microbiol Lett       Date:  2002-04-09       Impact factor: 2.742

8.  Enterohaemorrhagic Escherichia coli gains a competitive advantage by using ethanolamine as a nitrogen source in the bovine intestinal content.

Authors:  Yolande Bertin; J P Girardeau; F Chaucheyras-Durand; Bernard Lyan; Estelle Pujos-Guillot; Josée Harel; Christine Martin
Journal:  Environ Microbiol       Date:  2010-09-16       Impact factor: 5.491

9.  Global regulation by CsrA in Salmonella typhimurium.

Authors:  Sara D Lawhon; Jonathan G Frye; Mitsu Suyemoto; Steffen Porwollik; Michael McClelland; Craig Altier
Journal:  Mol Microbiol       Date:  2003-06       Impact factor: 3.501

Review 10.  Carbon catabolite repression by the catabolite control protein CcpA in Staphylococcus xylosus.

Authors:  Ivana Jankovic; Reinhold Brückner
Journal:  J Mol Microbiol Biotechnol       Date:  2002-05
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  10 in total

1.  NasT-mediated antitermination plays an essential role in the regulation of the assimilatory nitrate reductase operon in Azotobacter vinelandii.

Authors:  Baomin Wang; Leland S Pierson; Christopher Rensing; Malkanthi K Gunatilaka; Christina Kennedy
Journal:  Appl Environ Microbiol       Date:  2012-07-06       Impact factor: 4.792

2.  Small RNA Transcriptome of the Oral Microbiome during Periodontitis Progression.

Authors:  Ana E Duran-Pinedo; Susan Yost; Jorge Frias-Lopez
Journal:  Appl Environ Microbiol       Date:  2015-07-17       Impact factor: 4.792

3.  Riboswitches. A riboswitch-containing sRNA controls gene expression by sequestration of a response regulator.

Authors:  Sruti DebRoy; Margo Gebbie; Arati Ramesh; Jonathan R Goodson; Melissa R Cruz; Ambro van Hoof; Wade C Winkler; Danielle A Garsin
Journal:  Science       Date:  2014-08-22       Impact factor: 47.728

4.  Ethanolamine Catabolism in Pseudomonas aeruginosa PAO1 Is Regulated by the Enhancer-Binding Protein EatR (PA4021) and the Alternative Sigma Factor RpoN.

Authors:  Benjamin R Lundgren; Zaara Sarwar; Atahualpa Pinto; Jack G Ganley; Christopher T Nomura
Journal:  J Bacteriol       Date:  2016-08-11       Impact factor: 3.490

5.  Development of a genomic site for gene integration and expression in Enterococcus faecalis.

Authors:  Sruti Debroy; Ransome van der Hoeven; Kavindra V Singh; Peng Gao; Barrett R Harvey; Barbara E Murray; Danielle A Garsin
Journal:  J Microbiol Methods       Date:  2012-04-18       Impact factor: 2.363

Review 6.  The unmasking of 'junk' RNA reveals novel sRNAs: from processed RNA fragments to marooned riboswitches.

Authors:  Nicholas R De Lay; Danielle A Garsin
Journal:  Curr Opin Microbiol       Date:  2016-01-06       Impact factor: 7.934

7.  Found: the elusive ANTAR transcription antiterminator.

Authors:  Valley Stewart; Herman van Tilbeurgh
Journal:  PLoS Genet       Date:  2012-06-07       Impact factor: 5.917

8.  The mechanism for RNA recognition by ANTAR regulators of gene expression.

Authors:  Arati Ramesh; Sruti DebRoy; Jonathan R Goodson; Kristina A Fox; Herbey Faz; Danielle A Garsin; Wade C Winkler
Journal:  PLoS Genet       Date:  2012-06-07       Impact factor: 5.917

Review 9.  Ethanolamine Utilization in Bacteria.

Authors:  Karan Gautam Kaval; Danielle A Garsin
Journal:  MBio       Date:  2018-02-20       Impact factor: 7.867

10.  Identification of a Novel Cobamide Remodeling Enzyme in the Beneficial Human Gut Bacterium Akkermansia muciniphila.

Authors:  Kenny C Mok; Olga M Sokolovskaya; Alexa M Nicolas; Zachary F Hallberg; Adam Deutschbauer; Hans K Carlson; Michiko E Taga
Journal:  mBio       Date:  2020-12-08       Impact factor: 7.867

  10 in total

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