Literature DB >> 19246376

Atomic structure reveals the unique capsid organization of a dsRNA virus.

Junhua Pan1, Liping Dong, Li Lin, Wendy F Ochoa, Robert S Sinkovits, Wendy M Havens, Max L Nibert, Timothy S Baker, Said A Ghabrial, Yizhi Jane Tao.   

Abstract

For most dsRNA viruses, the genome-enclosing capsid comprises 120 copies of a single capsid protein (CP) organized into 60 icosahedrally equivalent dimers, generally identified as 2 nonsymmetricallyinteracting CP molecules with extensive lateral contacts. The crystal structure of a partitivirus, Penicillium stoloniferum virus F (PsV-F), reveals a different organization, in which the CP dimer is related by almost-perfect local 2-fold symmetry, forms prominent surface arches, and includes extensive structure swapping between the 2 subunits. An electron cryomicroscopy map of PsV-F shows that the disordered N terminus of each CP molecule interacts with the dsRNA genome and probably participates in its packaging or transcription. Intact PsV-F particles mediate semiconservative transcription, and transcripts are likely to exit through negatively charged channels at the icosahedral 5-fold axes. Other findings suggest that the PsV-F capsid is assembled from dimers of CP dimers, with an arrangement similar to flavivirus E glycoproteins.

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Year:  2009        PMID: 19246376      PMCID: PMC2657383          DOI: 10.1073/pnas.0812071106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

1.  Structure-derived insights into virus assembly.

Authors:  Vijay S Reddy; John E Johnson
Journal:  Adv Virus Res       Date:  2005       Impact factor: 9.937

2.  Electron cryomicroscopy comparison of the architectures of the enveloped bacteriophages phi6 and phi8.

Authors:  Harri T Jäälinoja; Juha T Huiskonen; Sarah J Butcher
Journal:  Structure       Date:  2007-02       Impact factor: 5.006

3.  L-A virus at 3.4 A resolution reveals particle architecture and mRNA decapping mechanism.

Authors:  Hisashi Naitow; Jinghua Tang; Mary Canady; Reed B Wickner; John E Johnson
Journal:  Nat Struct Biol       Date:  2002-10

4.  The atomic structure of the bluetongue virus core.

Authors:  J M Grimes; J N Burroughs; P Gouet; J M Diprose; R Malby; S Ziéntara; P P Mertens; D I Stuart
Journal:  Nature       Date:  1998-10-01       Impact factor: 49.962

5.  The Penicillium stoloniferum virus complex: two similar double-stranded RNA virus-like particles in a single cell.

Authors:  R F Bozarth; H A Wood; A Mandelbrot
Journal:  Virology       Date:  1971-08       Impact factor: 3.616

6.  Early steps in reovirus infection are associated with dramatic changes in supramolecular structure and protein conformation: analysis of virions and subviral particles by cryoelectron microscopy and image reconstruction.

Authors:  K A Dryden; G Wang; M Yeager; M L Nibert; K M Coombs; D B Furlong; B N Fields; T S Baker
Journal:  J Cell Biol       Date:  1993-09       Impact factor: 10.539

7.  Semi-conservative replication of double-stranded RNA by a virion-associated RNA polymerase.

Authors:  K W Buck
Journal:  Biochem Biophys Res Commun       Date:  1978-10-16       Impact factor: 3.575

8.  Three-dimensional structure of infectious bursal disease virus determined by electron cryomicroscopy.

Authors:  B Böttcher; N A Kiselev; V Y Stel'Mashchuk; N A Perevozchikova; A V Borisov; R A Crowther
Journal:  J Virol       Date:  1997-01       Impact factor: 5.103

9.  The atomic structure of rice dwarf virus reveals the self-assembly mechanism of component proteins.

Authors:  Atsushi Nakagawa; Naoyuki Miyazaki; Junichiro Taka; Hisashi Naitow; Akira Ogawa; Zui Fujimoto; Hiroshi Mizuno; Takahiko Higashi; Yasuo Watanabe; Toshihiro Omura; R Holland Cheng; Tomitake Tsukihara
Journal:  Structure       Date:  2003-10       Impact factor: 5.006

10.  Structure of L-A virus: a specialized compartment for the transcription and replication of double-stranded RNA.

Authors:  J R Castón; B L Trus; F P Booy; R B Wickner; J S Wall; A C Steven
Journal:  J Cell Biol       Date:  1997-09-08       Impact factor: 10.539

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  37 in total

1.  Backbone trace of partitivirus capsid protein from electron cryomicroscopy and homology modeling.

Authors:  Jinghua Tang; Junhua Pan; Wendy M Havens; Wendy F Ochoa; Tom S Y Guu; Said A Ghabrial; Max L Nibert; Yizhi Jane Tao; Timothy S Baker
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

2.  The T=1 capsid protein of Penicillium chrysogenum virus is formed by a repeated helix-rich core indicative of gene duplication.

Authors:  Daniel Luque; José M González; Damiá Garriga; Said A Ghabrial; Wendy M Havens; Benes Trus; Nuria Verdaguer; José L Carrascosa; José R Castón
Journal:  J Virol       Date:  2010-05-12       Impact factor: 5.103

3.  Cryphonectria nitschkei virus 1 structure shows that the capsid protein of chrysoviruses is a duplicated helix-rich fold conserved in fungal double-stranded RNA viruses.

Authors:  Josué Gómez-Blanco; Daniel Luque; José M González; José L Carrascosa; Carlos Alfonso; Benes Trus; Wendy M Havens; Said A Ghabrial; José R Castón
Journal:  J Virol       Date:  2012-05-16       Impact factor: 5.103

4.  A new putative alphapartitivirus recovered from the powdery mildew fungus Erysiphe palczewskii.

Authors:  Guihong Xiong; Ping Qiu; Cong Li; Zhuo Chen; Saif Ul Islam; Shouguo Fang; Zujian Wu; Songbai Zhang; Zhenguo Du
Journal:  Virus Genes       Date:  2017-02-27       Impact factor: 2.332

5.  Structure of RNA polymerase complex and genome within a dsRNA virus provides insights into the mechanisms of transcription and assembly.

Authors:  Xurong Wang; Fuxian Zhang; Rui Su; Xiaowu Li; Wenyuan Chen; Qingxiu Chen; Tao Yang; Jiawei Wang; Hongrong Liu; Qin Fang; Lingpeng Cheng
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-25       Impact factor: 11.205

6.  Cryo-electron Microscopy Structure, Assembly, and Mechanics Show Morphogenesis and Evolution of Human Picobirnavirus.

Authors:  Álvaro Ortega-Esteban; Carlos P Mata; María J Rodríguez-Espinosa; Daniel Luque; Nerea Irigoyen; Javier M Rodríguez; Pedro J de Pablo; José R Castón
Journal:  J Virol       Date:  2020-11-23       Impact factor: 5.103

Review 7.  3D structures of fungal partitiviruses.

Authors:  Max L Nibert; Jinghua Tang; Jiatao Xie; Aaron M Collier; Said A Ghabrial; Timothy S Baker; Yizhi J Tao
Journal:  Adv Virus Res       Date:  2013       Impact factor: 9.937

8.  RNA virus replication complexes.

Authors:  Yizhi Jane Tao; Qiaozhen Ye
Journal:  PLoS Pathog       Date:  2010-07-22       Impact factor: 6.823

9.  Using cryoEM reconstruction and phase extension to determine crystal structure of bacteriophage ϕ6 major capsid protein.

Authors:  Daniel Nemecek; Pavel Plevka; Evzen Boura
Journal:  Protein J       Date:  2013-12       Impact factor: 2.371

10.  A novel partitivirus that confers hypovirulence on plant pathogenic fungi.

Authors:  Xueqiong Xiao; Jiasen Cheng; Jinghua Tang; Yanping Fu; Daohong Jiang; Timothy S Baker; Said A Ghabrial; Jiatao Xie
Journal:  J Virol       Date:  2014-06-25       Impact factor: 5.103

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