Literature DB >> 14527391

The atomic structure of rice dwarf virus reveals the self-assembly mechanism of component proteins.

Atsushi Nakagawa1, Naoyuki Miyazaki, Junichiro Taka, Hisashi Naitow, Akira Ogawa, Zui Fujimoto, Hiroshi Mizuno, Takahiko Higashi, Yasuo Watanabe, Toshihiro Omura, R Holland Cheng, Tomitake Tsukihara.   

Abstract

Rice dwarf virus (RDV), the causal agent of rice dwarf disease, is a member of the genus Phytoreovirus in the family Reoviridae. RDV is a double-shelled virus with a molecular mass of approximately 70 million Dalton. This virus is widely prevalent and is one of the viruses that cause the most economic damage in many Asian countries. The atomic structure of RDV was determined at 3.5 A resolution by X-ray crystallography. The double-shelled structure consists of two different proteins, the core protein P3 and the outer shell protein P8. The atomic structure shows structural and electrostatic complementarities between both homologous (P3-P3 and P8-P8) and heterologous (P3-P8) interactions, as well as overall conformational changes found in P3-P3 dimer caused by the insertion of amino-terminal loop regions of one of the P3 protein into the other. These interactions suggest how the 900 protein components are built into a higher-ordered virus core structure.

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Year:  2003        PMID: 14527391     DOI: 10.1016/j.str.2003.08.012

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  45 in total

1.  Constructing and validating initial Cα models from subnanometer resolution density maps with pathwalking.

Authors:  Mariah R Baker; Ian Rees; Steven J Ludtke; Wah Chiu; Matthew L Baker
Journal:  Structure       Date:  2012-03-07       Impact factor: 5.006

2.  The amino-terminal region of major capsid protein P3 is essential for self-assembly of single-shelled core-like particles of Rice dwarf virus.

Authors:  Kyoji Hagiwara; Takahiko Higashi; Naoyuki Miyazaki; Hisashi Naitow; R Holland Cheng; Atsushi Nakagawa; Hiroshi Mizuno; Tomitake Tsukihara; Toshihiro Omura
Journal:  J Virol       Date:  2004-03       Impact factor: 5.103

3.  Backbone trace of partitivirus capsid protein from electron cryomicroscopy and homology modeling.

Authors:  Jinghua Tang; Junhua Pan; Wendy M Havens; Wendy F Ochoa; Tom S Y Guu; Said A Ghabrial; Max L Nibert; Yizhi Jane Tao; Timothy S Baker
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

4.  The T=1 capsid protein of Penicillium chrysogenum virus is formed by a repeated helix-rich core indicative of gene duplication.

Authors:  Daniel Luque; José M González; Damiá Garriga; Said A Ghabrial; Wendy M Havens; Benes Trus; Nuria Verdaguer; José L Carrascosa; José R Castón
Journal:  J Virol       Date:  2010-05-12       Impact factor: 5.103

5.  Bluetongue virus coat protein VP2 contains sialic acid-binding domains, and VP5 resembles enveloped virus fusion proteins.

Authors:  Xing Zhang; Mark Boyce; Bishnupriya Bhattacharya; Xiaokang Zhang; Stan Schein; Polly Roy; Z Hong Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-23       Impact factor: 11.205

6.  The pore structure of the closed RyR1 channel.

Authors:  Steven J Ludtke; Irina I Serysheva; Susan L Hamilton; Wah Chiu
Journal:  Structure       Date:  2005-08       Impact factor: 5.006

7.  Identification of secondary structure elements in intermediate-resolution density maps.

Authors:  Matthew L Baker; Tao Ju; Wah Chiu
Journal:  Structure       Date:  2007-01       Impact factor: 5.006

8.  Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm.

Authors:  Xiangan Liu; Wen Jiang; Joanita Jakana; Wah Chiu
Journal:  J Struct Biol       Date:  2007-07-06       Impact factor: 2.867

9.  Geometric mismatches within the concentric layers of rotavirus particles: a potential regulatory switch of viral particle transcription activity.

Authors:  Sonia Libersou; Xavier Siebert; Malika Ouldali; Leandro F Estrozi; Jorge Navaza; Annie Charpilienne; Pascale Garnier; Didier Poncet; Jean Lepault
Journal:  J Virol       Date:  2008-01-09       Impact factor: 5.103

10.  Entry of Rice dwarf virus into cultured cells of its insect vector involves clathrin-mediated endocytosis.

Authors:  Taiyun Wei; Hongyan Chen; Tamaki Ichiki-Uehara; Hiroyuki Hibino; Toshihiro Omura
Journal:  J Virol       Date:  2007-05-02       Impact factor: 5.103

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