Literature DB >> 19221834

Bacterial succession on the leaf surface: a novel system for studying successional dynamics.

Amanda J Redford1, Noah Fierer.   

Abstract

Succession is a widely studied process in plant and animal systems, but succession in microbial communities has received relatively little attention despite the ubiquity of microorganisms in natural habitats. One important microbial habitat is the phyllosphere, or leaf surface, which harbors large, diverse populations of bacteria and offers unique opportunities for the study of succession and temporal community assembly patterns. To explore bacterial community successional patterns, we sampled phyllosphere communities on cottonwood (Populus deltoides) trees multiple times across the growing season, from leaf emergence to leaf fall. Bacterial community composition was highly variable throughout the growing season; leaves sampled as little as a week apart were found to harbor significantly different communities, and the temporal variability on a given tree exceeded the variability in community composition between individual trees sampled on a given day. The bacterial communities clearly clustered into early-, mid-, and late-season clusters, with early- and late-season communities being more similar to each other than to the mid-season communities, and these patterns appeared consistent from year to year. Although we observed clear and predictable changes in bacterial community composition during the course of the growing season, changes in phyllosphere bacterial diversity were less predictable. We examined the species-time relationship, a measure of species turnover rate, and found that the relationship was fundamentally similar to that observed in plant and invertebrate communities, just on a shorter time scale. The temporal dynamics we observed suggest that although phyllosphere bacterial communities have high levels of phylogenetic diversity and rapid turnover rates, these communities follow predictable successional patterns from season to season.

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Year:  2009        PMID: 19221834     DOI: 10.1007/s00248-009-9495-y

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  38 in total

1.  Succession of microbial communities during hot composting as detected by PCR-single-strand-conformation polymorphism-based genetic profiles of small-subunit rRNA genes.

Authors:  S Peters; S Koschinsky; F Schwieger; C C Tebbe
Journal:  Appl Environ Microbiol       Date:  2000-03       Impact factor: 4.792

2.  PCR-DGGE fingerprints of microbial succession during a manufacture of traditional water buffalo mozzarella cheese.

Authors:  D Ercolini; G Mauriello; G Blaiotta; G Moschetti; S Coppola
Journal:  J Appl Microbiol       Date:  2004       Impact factor: 3.772

3.  Bacterial community succession in natural river biofilm assemblages.

Authors:  Emilie Lyautey; Colin R Jackson; Jérôme Cayrou; Jean-Luc Rols; Frédéric Garabétian
Journal:  Microb Ecol       Date:  2005-12-15       Impact factor: 4.552

4.  Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.

Authors:  T Z DeSantis; P Hugenholtz; N Larsen; M Rojas; E L Brodie; K Keller; T Huber; D Dalevi; P Hu; G L Andersen
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

5.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2006-08-23       Impact factor: 6.937

6.  NULL MODELS FOR THE NUMBER OF EVOLUTIONARY STEPS IN A CHARACTER ON A PHYLOGENETIC TREE.

Authors:  Wayne P Maddison; Montgomery Slatkin
Journal:  Evolution       Date:  1991-08       Impact factor: 3.694

7.  The strategy of ecosystem development.

Authors:  E P Odum
Journal:  Science       Date:  1969-04-18       Impact factor: 47.728

8.  Estimating terrestrial biodiversity through extrapolation.

Authors:  R K Colwell; J A Coddington
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1994-07-29       Impact factor: 6.237

9.  NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes.

Authors:  T Z DeSantis; P Hugenholtz; K Keller; E L Brodie; N Larsen; Y M Piceno; R Phan; G L Andersen
Journal:  Nucleic Acids Res       Date:  2006-07-01       Impact factor: 16.971

10.  Development of the human infant intestinal microbiota.

Authors:  Chana Palmer; Elisabeth M Bik; Daniel B DiGiulio; David A Relman; Patrick O Brown
Journal:  PLoS Biol       Date:  2007-06-26       Impact factor: 8.029

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  81 in total

1.  Phyllosphere bacterial community of floating macrophytes in paddy soil environments as revealed by illumina high-throughput sequencing.

Authors:  Wan-Ying Xie; Jian-Qiang Su; Yong-Guan Zhu
Journal:  Appl Environ Microbiol       Date:  2014-10-31       Impact factor: 4.792

2.  Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field-grown lettuce.

Authors:  Gurdeep Rastogi; Adrian Sbodio; Jan J Tech; Trevor V Suslow; Gitta L Coaker; Johan H J Leveau
Journal:  ISME J       Date:  2012-04-26       Impact factor: 10.302

3.  Distinctive phyllosphere bacterial communities in tropical trees.

Authors:  Mincheol Kim; Dharmesh Singh; Ang Lai-Hoe; Rusea Go; Raha Abdul Rahim; A N Ainuddin; Jongsik Chun; Jonathan M Adams
Journal:  Microb Ecol       Date:  2011-10-12       Impact factor: 4.552

4.  Balance of neutral and deterministic components in the dynamics of activated sludge floc assembly.

Authors:  Joaquín M Ayarza; Leonardo Erijman
Journal:  Microb Ecol       Date:  2010-10-23       Impact factor: 4.552

5.  Both leaf properties and microbe-microbe interactions influence within-species variation in bacterial population diversity and structure in the lettuce (Lactuca Species) phyllosphere.

Authors:  Paul J Hunter; Paul Hand; David Pink; John M Whipps; Gary D Bending
Journal:  Appl Environ Microbiol       Date:  2010-10-15       Impact factor: 4.792

Review 6.  Patterns and processes of microbial community assembly.

Authors:  Diana R Nemergut; Steven K Schmidt; Tadashi Fukami; Sean P O'Neill; Teresa M Bilinski; Lee F Stanish; Joseph E Knelman; John L Darcy; Ryan C Lynch; Phillip Wickey; Scott Ferrenberg
Journal:  Microbiol Mol Biol Rev       Date:  2013-09       Impact factor: 11.056

7.  The temporal scaling of bacterioplankton composition: high turnover and predictability during shrimp cultivation.

Authors:  Jinbo Xiong; Jianlin Zhu; Kai Wang; Xin Wang; Xiansen Ye; Lian Liu; Qunfen Zhao; Manhua Hou; Linglin Qiuqian; Demin Zhang
Journal:  Microb Ecol       Date:  2013-12-05       Impact factor: 4.552

8.  Community proteogenomics reveals insights into the physiology of phyllosphere bacteria.

Authors:  Nathanaël Delmotte; Claudia Knief; Samuel Chaffron; Gerd Innerebner; Bernd Roschitzki; Ralph Schlapbach; Christian von Mering; Julia A Vorholt
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-04       Impact factor: 11.205

9.  Bacterial diversity across individual lichens.

Authors:  Alexandra A Mushegian; Celeste N Peterson; Christopher C M Baker; Anne Pringle
Journal:  Appl Environ Microbiol       Date:  2011-04-29       Impact factor: 4.792

10.  Seasonal Patterns Contribute More Towards Phyllosphere Bacterial Community Structure than Short-Term Perturbations.

Authors:  Bram W G Stone; Colin R Jackson
Journal:  Microb Ecol       Date:  2020-08-01       Impact factor: 4.552

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