Literature DB >> 1922054

Conserved mechanism of tRNA splicing in eukaryotes.

M Zillmann1, M A Gorovsky, E M Phizicky.   

Abstract

The ligation steps of tRNA splicing in yeast and vertebrate cells have been thought to proceed by fundamentally different mechanisms. Ligation in yeast cells occurs by incorporation of an exogenous phosphate from ATP into the splice junction, with concomitant formation of a 2' phosphate at the 5' junction nucleotide. This phosphate is removed in a subsequent step which, in vitro, is catalyzed by an NAD-dependent dephosphorylating activity. In contrast, tRNA ligation in vertebrates has been reported to occur without incorporation of exogenous phosphate or formation of a 2' phosphate. We demonstrate in this study the existence of a yeast tRNA ligase-like activity in HeLa cells. Furthermore, in extracts from these cells, the entire yeastlike tRNA splicing machinery is intact, including that for cleavage, ligation, and removal of the 2' phosphate in an NAD-dependent fashion to give mature tRNA. These results argue that the mechanism of tRNA splicing is conserved among eukaryotes.

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Year:  1991        PMID: 1922054      PMCID: PMC361676          DOI: 10.1128/mcb.11.11.5410-5416.1991

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  32 in total

1.  Isolation and characterization of an RNA ligase from HeLa cells.

Authors:  K K Perkins; H Furneaux; J Hurwitz
Journal:  Proc Natl Acad Sci U S A       Date:  1985-02       Impact factor: 11.205

2.  Precise excision of intervening sequences from precursor tRNAs by a membrane-associated yeast endonuclease.

Authors:  C L Peebles; P Gegenheimer; J Abelson
Journal:  Cell       Date:  1983-02       Impact factor: 41.582

3.  Structure of intron-containing tRNA precursors. Analysis of solution conformation using chemical and enzymatic probes.

Authors:  H Swerdlow; C Guthrie
Journal:  J Biol Chem       Date:  1984-04-25       Impact factor: 5.157

4.  Characterization of tRNA precursor splicing in mammalian extracts.

Authors:  F A Laski; A Z Fire; U L RajBhandary; P A Sharp
Journal:  J Biol Chem       Date:  1983-10-10       Impact factor: 5.157

5.  Nuclear ligation of RNA 5'-OH kinase products in tRNA.

Authors:  I Winicov; J D Button
Journal:  Mol Cell Biol       Date:  1982-03       Impact factor: 4.272

6.  Purification of wheat germ RNA ligase. I. Characterization of a ligase-associated 5'-hydroxyl polynucleotide kinase activity.

Authors:  L Pick; J Hurwitz
Journal:  J Biol Chem       Date:  1986-05-25       Impact factor: 5.157

7.  Substrate recognition and identification of splice sites by the tRNA-splicing endonuclease and ligase from Saccharomyces cerevisiae.

Authors:  C L Greer; D Söll; I Willis
Journal:  Mol Cell Biol       Date:  1987-01       Impact factor: 4.272

8.  RNA 3'-terminal phosphate cyclase activity and RNA ligation in HeLa cell extract.

Authors:  W Filipowicz; M Konarska; H J Gross; A J Shatkin
Journal:  Nucleic Acids Res       Date:  1983-03-11       Impact factor: 16.971

9.  Transfer RNA splicing in Saccharomyces cerevisiae. Secondary and tertiary structures of the substrates.

Authors:  M C Lee; G Knapp
Journal:  J Biol Chem       Date:  1985-03-10       Impact factor: 5.157

10.  Binding and cleavage of pre-tRNA by the Xenopus splicing endonuclease: two separable steps of the intron excision reaction.

Authors:  M I Baldi; E Mattoccia; S Ciafrè; D G Attardi; G P Tocchini-Valentini
Journal:  Cell       Date:  1986-12-26       Impact factor: 41.582

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  39 in total

1.  Characterization of the Saccharomyces cerevisiae cyclic nucleotide phosphodiesterase involved in the metabolism of ADP-ribose 1",2"-cyclic phosphate.

Authors:  F Nasr; W Filipowicz
Journal:  Nucleic Acids Res       Date:  2000-04-15       Impact factor: 16.971

2.  A host-specific function is required for ligation of a wide variety of ribozyme-processed RNAs.

Authors:  C E Reid; D W Lazinski
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-04       Impact factor: 11.205

3.  Structure and mechanism of activity of the cyclic phosphodiesterase of Appr>p, a product of the tRNA splicing reaction.

Authors:  A Hofmann; A Zdanov; P Genschik; S Ruvinov; W Filipowicz; A Wlodawer
Journal:  EMBO J       Date:  2000-11-15       Impact factor: 11.598

Review 4.  tRNA biology charges to the front.

Authors:  Eric M Phizicky; Anita K Hopper
Journal:  Genes Dev       Date:  2010-09-01       Impact factor: 11.361

5.  Analysis of 2'-phosphotransferase (Tpt1p) from Saccharomyces cerevisiae: evidence for a conserved two-step reaction mechanism.

Authors:  Michelle A Steiger; Jane E Jackman; Eric M Phizicky
Journal:  RNA       Date:  2005-01       Impact factor: 4.942

6.  RtcB, a novel RNA ligase, can catalyze tRNA splicing and HAC1 mRNA splicing in vivo.

Authors:  Naoko Tanaka; Birthe Meineke; Stewart Shuman
Journal:  J Biol Chem       Date:  2011-07-11       Impact factor: 5.157

7.  The human RNA 3'-terminal phosphate cyclase is a member of a new family of proteins conserved in Eucarya, Bacteria and Archaea.

Authors:  P Genschik; E Billy; M Swianiewicz; W Filipowicz
Journal:  EMBO J       Date:  1997-05-15       Impact factor: 11.598

8.  Characterization of a thermostable archaeal polynucleotide kinase homologous to human Clp1.

Authors:  Ruchi Jain; Stewart Shuman
Journal:  RNA       Date:  2009-03-19       Impact factor: 4.942

9.  A functional homolog of a yeast tRNA splicing enzyme is conserved in higher eukaryotes and in Escherichia coli.

Authors:  S L Spinelli; H S Malik; S A Consaul; E M Phizicky
Journal:  Proc Natl Acad Sci U S A       Date:  1998-11-24       Impact factor: 11.205

10.  The cyclic phosphodiesterase CNP and RNA cyclase RtcA fine-tune noncanonical XBP1 splicing during ER stress.

Authors:  Irem Unlu; Yanyan Lu; Xiaozhong Wang
Journal:  J Biol Chem       Date:  2018-10-24       Impact factor: 5.157

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