Literature DB >> 19208936

What have we learned from the studies of two-state folders, and what are the unanswered questions about two-state protein folding?

Doug Barrick1.   

Abstract

Small proteins with globular structures often fold by simple all-or-none mechanisms, both in an equilibrium and a kinetic sense, despite the very large number of partly folded conformations available. This type of 'two-state' folding will be discussed in terms of experimental tests, underlying molecular mechanisms, and limits to two-state behavior. Factors that appear to be important for two-state folding include topology (sequence distance of contacts in the native structure), molecular cooperativity and local energy distribution. Because their local stability distributions and cooperativities can be dissected and analyzed separately from topological features, recent studies of the folding of symmetric proteins will be discussed as a means to better understand the origins of two-state folding.

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Year:  2009        PMID: 19208936      PMCID: PMC2822238          DOI: 10.1088/1478-3975/6/1/015001

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  102 in total

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Authors:  S E Jackson; A R Fersht
Journal:  Biochemistry       Date:  1991-10-29       Impact factor: 3.162

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Authors:  D P Goldenberg; R W Frieden; J A Haack; T B Morrison
Journal:  Nature       Date:  1989-03-09       Impact factor: 49.962

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Authors:  A Matouschek; J T Kellis; L Serrano; A R Fersht
Journal:  Nature       Date:  1989-07-13       Impact factor: 49.962

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Authors:  C R Matthews
Journal:  Methods Enzymol       Date:  1987       Impact factor: 1.600

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Journal:  Methods Enzymol       Date:  1983       Impact factor: 1.600

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Authors:  D Shortle; D DiMaio; D Nathans
Journal:  Annu Rev Genet       Date:  1981       Impact factor: 16.830

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Authors:  R Lumry; R Biltonen
Journal:  Biopolymers       Date:  1966-09       Impact factor: 2.505

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Authors:  S Khorasanizadeh; I D Peters; T R Butt; H Roder
Journal:  Biochemistry       Date:  1993-07-13       Impact factor: 3.162

10.  Low-temperature unfolding of a mutant of phage T4 lysozyme. 2. Kinetic investigations.

Authors:  B L Chen; W A Baase; J A Schellman
Journal:  Biochemistry       Date:  1989-01-24       Impact factor: 3.162

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  13 in total

1.  Protein folded states are kinetic hubs.

Authors:  Gregory R Bowman; Vijay S Pande
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-01       Impact factor: 11.205

2.  How long does it take to equilibrate the unfolded state of a protein?

Authors:  Ronald M Levy; Wei Dai; Nan-Jie Deng; Dmitrii E Makarov
Journal:  Protein Sci       Date:  2013-09-17       Impact factor: 6.725

3.  Protein domain definition should allow for conditional disorder.

Authors:  Kavestri Yegambaram; Esther M M Bulloch; Richard L Kingston
Journal:  Protein Sci       Date:  2013-09-20       Impact factor: 6.725

4.  Probing the origins of two-state folding.

Authors:  Thomas J Lane; Christian R Schwantes; Kyle A Beauchamp; Vijay S Pande
Journal:  J Chem Phys       Date:  2013-10-14       Impact factor: 3.488

5.  Reassessing the folding of the KIX domain: evidence for a two-state mechanism.

Authors:  Angela Morrone; Rajanish Giri; Maurizio Brunori; Stefano Gianni
Journal:  Protein Sci       Date:  2012-10-09       Impact factor: 6.725

6.  Modulating long-range energetics via helix stabilization: A case study using T4 lysozyme.

Authors:  Sabriya N Rosemond; Kambiz M Hamadani; Jamie H D Cate; Susan Marqusee
Journal:  Protein Sci       Date:  2018-12       Impact factor: 6.725

7.  Heterogeneity in the Folding of Villin Headpiece Subdomain HP36.

Authors:  Sureshbabu Nagarajan; Shifeng Xiao; Daniel P Raleigh; R Brian Dyer
Journal:  J Phys Chem B       Date:  2018-08-28       Impact factor: 2.991

8.  Thermodynamics of protein folding using a modified Wako-Saitô-Muñoz-Eaton model.

Authors:  Min-Yeh Tsai; Jian-Min Yuan; Yoshiaki Teranishi; Sheng Hsien Lin
Journal:  J Biol Phys       Date:  2012-06-21       Impact factor: 1.365

Review 9.  How cooperative are protein folding and unfolding transitions?

Authors:  Pooja Malhotra; Jayant B Udgaonkar
Journal:  Protein Sci       Date:  2016-09-13       Impact factor: 6.725

10.  Identification and Characterization of an Inside-Out Folding Intermediate of T4 Phage Sliding Clamp.

Authors:  Manika Indrajit Singh; Vikas Jain
Journal:  Biophys J       Date:  2017-10-17       Impact factor: 4.033

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