Literature DB >> 19204733

An unexpected twist in viral capsid maturation.

Ilya Gertsman1, Lu Gan, Miklos Guttman, Kelly Lee, Jeffrey A Speir, Robert L Duda, Roger W Hendrix, Elizabeth A Komives, John E Johnson.   

Abstract

Lambda-like double-stranded (ds) DNA bacteriophage undergo massive conformational changes in their capsid shell during the packaging of their viral genomes. Capsid shells are complex organizations of hundreds of protein subunits that assemble into intricate quaternary complexes that ultimately are able to withstand over 50 atm of pressure during genome packaging. The extensive integration between subunits in capsids requires the formation of an intermediate complex, termed a procapsid, from which individual subunits can undergo the necessary refolding and structural rearrangements needed to transition to the more stable capsid. Although various mature capsids have been characterized at atomic resolution, no such procapsid structure is available for a dsDNA virus or bacteriophage. Here we present a procapsid X-ray structure at 3.65 A resolution, termed prohead II, of the lambda-like bacteriophage HK97, the mature capsid structure of which was previously solved to 3.44 A (ref. 2). A comparison of the two largely different capsid forms has unveiled an unprecedented expansion mechanism that describes the transition. Crystallographic and hydrogen/deuterium exchange data presented here demonstrate that the subunit tertiary structures are significantly different between the two states, with twisting and bending motions occurring in both helical and beta-sheet regions. We also identified subunit interactions at each three-fold axis of the capsid that are maintained throughout maturation. The interactions sustain capsid integrity during subunit refolding and provide a fixed hinge from which subunits undergo rotational and translational motions during maturation. Previously published calorimetric data of a closely related bacteriophage, P22, showed that capsid maturation was an exothermic process that resulted in a release of 90 kJ mol(-1) of energy. We propose that the major tertiary changes presented in this study reveal a structural basis for an exothermic maturation process probably present in many dsDNA bacteriophage and possibly viruses such as herpesvirus, which share the HK97 subunit fold.

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Year:  2009        PMID: 19204733      PMCID: PMC2765791          DOI: 10.1038/nature07686

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  25 in total

1.  Protein chainmail: catenated protein in viral capsids.

Authors:  R L Duda
Journal:  Cell       Date:  1998-07-10       Impact factor: 41.582

2.  Mechanism of capsid maturation in a double-stranded DNA virus.

Authors:  R Tuma; P E Prevelige; G J Thomas
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-18       Impact factor: 11.205

3.  Proteolytic and conformational control of virus capsid maturation: the bacteriophage HK97 system.

Authors:  J F Conway; R L Duda; N Cheng; R W Hendrix; A C Steven
Journal:  J Mol Biol       Date:  1995-10-13       Impact factor: 5.469

4.  Assembly in vitro of bacteriophage HK97 proheads.

Authors:  Z Xie; R W Hendrix
Journal:  J Mol Biol       Date:  1995-10-13       Impact factor: 5.469

5.  The bacteriophage straight phi29 portal motor can package DNA against a large internal force.

Authors:  D E Smith; S J Tans; S B Smith; S Grimes; D L Anderson; C Bustamante
Journal:  Nature       Date:  2001-10-18       Impact factor: 49.962

6.  Coat protein fold and maturation transition of bacteriophage P22 seen at subnanometer resolutions.

Authors:  Wen Jiang; Zongli Li; Zhixian Zhang; Matthew L Baker; Peter E Prevelige; Wah Chiu
Journal:  Nat Struct Biol       Date:  2003-02

7.  Structural transitions during bacteriophage HK97 head assembly.

Authors:  R L Duda; J Hempel; H Michel; J Shabanowitz; D Hunt; R W Hendrix
Journal:  J Mol Biol       Date:  1995-04-07       Impact factor: 5.469

8.  Genetic basis of bacteriophage HK97 prohead assembly.

Authors:  R L Duda; K Martincic; R W Hendrix
Journal:  J Mol Biol       Date:  1995-04-07       Impact factor: 5.469

9.  Evidence that a local refolding event triggers maturation of HK97 bacteriophage capsid.

Authors:  Kelly K Lee; Lu Gan; Hiro Tsuruta; Roger W Hendrix; Robert L Duda; John E Johnson
Journal:  J Mol Biol       Date:  2004-07-09       Impact factor: 5.469

10.  Biophysical characterization of the free IkappaBalpha ankyrin repeat domain in solution.

Authors:  Carrie Hughes Croy; Simon Bergqvist; Tom Huxford; Gourisankar Ghosh; Elizabeth A Komives
Journal:  Protein Sci       Date:  2004-07       Impact factor: 6.725

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  70 in total

1.  The Prohead-I structure of bacteriophage HK97: implications for scaffold-mediated control of particle assembly and maturation.

Authors:  Rick K Huang; Reza Khayat; Kelly K Lee; Ilya Gertsman; Robert L Duda; Roger W Hendrix; John E Johnson
Journal:  J Mol Biol       Date:  2011-01-27       Impact factor: 5.469

Review 2.  Virus maturation.

Authors:  David Veesler; John E Johnson
Journal:  Annu Rev Biophys       Date:  2012-02-23       Impact factor: 12.981

3.  On the morphology of viral capsids: elastic properties and buckling transitions.

Authors:  Eric R May; Charles L Brooks
Journal:  J Phys Chem B       Date:  2012-03-27       Impact factor: 2.991

4.  Capsomer dynamics and stabilization in the T = 12 marine bacteriophage SIO-2 and its procapsid studied by CryoEM.

Authors:  Gabriel C Lander; Anne-Claire Baudoux; Farooq Azam; Clinton S Potter; Bridget Carragher; John E Johnson
Journal:  Structure       Date:  2012-03-07       Impact factor: 5.006

5.  Mechanics of bacteriophage maturation.

Authors:  Wouter H Roos; Ilya Gertsman; Eric R May; Charles L Brooks; John E Johnson; Gijs J L Wuite
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

Review 6.  Procapsid assembly, maturation, nuclear exit: dynamic steps in the production of infectious herpesvirions.

Authors:  Giovanni Cardone; J Bernard Heymann; Naiqian Cheng; Benes L Trus; Alasdair C Steven
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

7.  Exploring the symmetry and mechanism of virus capsid maturation via an ensemble of pathways.

Authors:  Eric R May; Jun Feng; Charles L Brooks
Journal:  Biophys J       Date:  2012-02-07       Impact factor: 4.033

8.  Balanced electrostatic and structural forces guide the large conformational change associated with maturation of T = 4 virus.

Authors:  Tsutomu Matsui; Hiro Tsuruta; John E Johnson
Journal:  Biophys J       Date:  2010-04-07       Impact factor: 4.033

9.  Molecular rearrangements involved in the capsid shell maturation of bacteriophage T7.

Authors:  Alina Ionel; Javier A Velázquez-Muriel; Daniel Luque; Ana Cuervo; José R Castón; José M Valpuesta; Jaime Martín-Benito; José L Carrascosa
Journal:  J Biol Chem       Date:  2010-10-20       Impact factor: 5.157

10.  A conformational switch involved in maturation of Staphylococcus aureus bacteriophage 80α capsids.

Authors:  Michael S Spilman; Altaira D Dearborn; Jenny R Chang; Priyadarshan K Damle; Gail E Christie; Terje Dokland
Journal:  J Mol Biol       Date:  2010-12-01       Impact factor: 5.469

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