Literature DB >> 19196162

An emissive C analog distinguishes between G, 8-oxoG, and T.

Nicholas J Greco1, Renatus W Sinkeldam, Yitzhak Tor.   

Abstract

A minimally disruptive fluorescent dC analog provides a rapid and non-destructive method for in vitro detection of G, 8-oxoG, and T, the downstream transverse mutation product.

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Year:  2009        PMID： 19196162      PMCID： PMC2765557          DOI： 10.1021/ol802656n

Source DB:  PubMed          Journal:  Org Lett        ISSN： 1523-7052            Impact factor:   6.005


  51 in total

1.  Promoter clearance by T7 RNA polymerase. Initial bubble collapse and transcript dissociation monitored by base analog fluorescence.

Authors:  Cuihua Liu; Craig T Martin
Journal:  J Biol Chem       Date:  2001-11-01       Impact factor: 5.157

2.  Synthesis of the phosphoramidite derivatives of 2'-deoxy-2'-C-alpha-methylcytidine and 2'-deoxy-2'-C-alpha-hydroxymethylcytidine: analogues for chemical dissection of RNA's 2'-hydroxyl group.

Authors:  Nan-Sheng Li; Joseph A Piccirilli
Journal:  J Org Chem       Date:  2004-07-09       Impact factor: 4.354

Review 3.  Base-excision repair of oxidative DNA damage.

Authors:  Sheila S David; Valerie L O'Shea; Sucharita Kundu
Journal:  Nature       Date:  2007-06-21       Impact factor: 49.962

4.  Specific fluorescent probe for 8-oxoguanosine.

Authors:  Osamu Nakagawa; Sayaka Ono; Zhichun Li; Akira Tsujimoto; Shigeki Sasaki
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

5.  Fluorescence detection of 8-oxoguanine in nuclear and mitochondrial DNA of cultured cells using a recombinant Fab and confocal scanning laser microscopy.

Authors:  R P Soultanakis; R J Melamede; I A Bespalov; S S Wallace; K B Beckman; B N Ames; D J Taatjes; Y M Janssen-Heininger
Journal:  Free Radic Biol Med       Date:  2000-03-15       Impact factor: 7.376

6.  4-amino-1H-benzo[g]quinazoline-2-one: a fluorescent analog of cytosine to probe protonation sites in triplex forming oligonucleotides.

Authors:  F Godde; J J Toulmé; S Moreau
Journal:  Nucleic Acids Res       Date:  2000-08-01       Impact factor: 16.971

Review 7.  Oxidants, antioxidants, and the degenerative diseases of aging.

Authors:  B N Ames; M K Shigenaga; T M Hagen
Journal:  Proc Natl Acad Sci U S A       Date:  1993-09-01       Impact factor: 11.205

8.  Fluorescence and hybridization properties of peptide nucleic acid containing a substituted phenylpyrrolocytosine designed to engage Guanine with an additional H-bond.

Authors:  Filip Wojciechowski; Robert H E Hudson
Journal:  J Am Chem Soc       Date:  2008-08-30       Impact factor: 15.419

9.  Using pyrrolo-deoxycytosine to probe RNA/DNA hybrids containing the human immunodeficiency virus type-1 3' polypurine tract.

Authors:  Chandravanu Dash; Jason W Rausch; Stuart F J Le Grice
Journal:  Nucleic Acids Res       Date:  2004-03-05       Impact factor: 16.971

Review 10.  In vitro and in vivo effects of oxidative damage to deoxyguanosine.

Authors:  M M Greenberg
Journal:  Biochem Soc Trans       Date:  2004-02       Impact factor: 5.407
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  15 in total

1.  Design, synthesis, and spectroscopic properties of extended and fused pyrrolo-dC and pyrrolo-C analogs.

Authors:  Mary S Noé; Andro C Ríos; Yitzhak Tor
Journal:  Org Lett       Date:  2012-05-30       Impact factor: 6.005

Review 2.  Investigating the biochemical impact of DNA damage with structure-based probes: abasic sites, photodimers, alkylation adducts, and oxidative lesions.

Authors:  Heidi A Dahlmann; V G Vaidyanathan; Shana J Sturla
Journal:  Biochemistry       Date:  2009-10-13       Impact factor: 3.162

Review 3.  Fluorescent analogs of biomolecular building blocks: design, properties, and applications.

Authors:  Renatus W Sinkeldam; Nicholas J Greco; Yitzhak Tor
Journal:  Chem Rev       Date:  2010-05-12       Impact factor: 60.622

4.  Enzymatic incorporation and utilization of an emissive 6-azauridine.

Authors:  Patrycja A Hopkins; Lisa S McCoy; Yitzhak Tor
Journal:  Org Biomol Chem       Date:  2017-01-18       Impact factor: 3.876

5.  Emissive nucleosides as molecular rotors.

Authors:  Renatus W Sinkeldam; Andrea J Wheat; Hande Boyaci; Yitzhak Tor
Journal:  Chemphyschem       Date:  2010-12-27       Impact factor: 3.102

6.  Emissive RNA alphabet.

Authors:  Dongwon Shin; Renatus W Sinkeldam; Yitzhak Tor
Journal:  J Am Chem Soc       Date:  2011-09-02       Impact factor: 15.419

7.  Oligodeoxynucleotides containing multiple thiophene-modified isomorphic fluorescent nucleosides.

Authors:  Mary S Noé; Renatus W Sinkeldam; Yitzhak Tor
Journal:  J Org Chem       Date:  2013-08-05       Impact factor: 4.354

8.  Multisensing emissive pyrimidine.

Authors:  Renatus W Sinkeldam; Paul Marcus; Dmitriy Uchenik; Yitzhak Tor
Journal:  Chemphyschem       Date:  2011-06-22       Impact factor: 3.102

9.  Recognition of O6-benzyl-2'-deoxyguanosine by a perimidinone-derived synthetic nucleoside: a DNA interstrand stacking interaction.

Authors:  Ewa A Kowal; Rahul R Lad; Pradeep S Pallan; Elizabeth Dhummakupt; Zdzislaw Wawrzak; Martin Egli; Shana J Sturla; Michael P Stone
Journal:  Nucleic Acids Res       Date:  2013-06-08       Impact factor: 16.971

10.  DNA modification under mild conditions by Suzuki-Miyaura cross-coupling for the generation of functional probes.

Authors:  Lukas Lercher; Joanna F McGouran; Benedikt M Kessler; Christopher J Schofield; Benjamin G Davis
Journal:  Angew Chem Int Ed Engl       Date:  2013-08-13       Impact factor: 15.336
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