Literature DB >> 19193517

Compressed and distributed sensing of neuronal activity for real time spike train decoding.

Mehdi Aghagolzadeh1, Karim Oweiss.   

Abstract

Multivariate point processes are increasingly being used to model neuronal response properties in the cortex. Estimating the conditional intensity functions underlying these processes is important to characterize and decode the firing patterns of cortical neurons. This paper proposes a new approach for estimating these intensity functions directly from a compressed representation of the neurons' extracellular recordings. The approach is based on exploiting a sparse representation of the extracellular spike waveforms, previously demonstrated to yield near-optimal denoising and compression properties. We show that by restricting this sparse representation to a subset of projections that simultaneously preserve features of the spike waveforms in addition to the temporal characteristics of the underlying intensity functions, we can reasonably approximate the instantaneous firing rates of the recorded neurons with variable tuning characteristics across a multitude of time scales. Such feature is highly desirable to detect subtle temporal differences in neuronal firing characteristics from single-trial data. An added advantage of this approach is that it eliminates multiple steps from the typical processing path of neural signals that are customarily performed for instantaneous neural decoding. We demonstrate the decoding performance of the approach using a stochastic cosine tuning model of motor cortical activity during a natural, nongoal-directed 2-D arm movement.

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Year:  2009        PMID: 19193517      PMCID: PMC2782557          DOI: 10.1109/TNSRE.2009.2012711

Source DB:  PubMed          Journal:  IEEE Trans Neural Syst Rehabil Eng        ISSN: 1534-4320            Impact factor:   3.802


  22 in total

Review 1.  Optimal firing rate estimation.

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Journal:  Neural Netw       Date:  2001 Jul-Sep

2.  Dynamical changes and temporal precision of synchronized spiking activity in monkey motor cortex during movement preparation.

Authors:  A Riehle; F Grammont; M Diesmann; S Grün
Journal:  J Physiol Paris       Date:  2000 Sep-Dec

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5.  A systems approach for data compression and latency reduction in cortically controlled brain machine interfaces.

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Journal:  IEEE Trans Biomed Eng       Date:  2006-07       Impact factor: 4.538

6.  An improved method for the estimation of firing rate dynamics using an optimal digital filter.

Authors:  Sofiane Cherif; Kathleen E Cullen; Henrietta L Galiana
Journal:  J Neurosci Methods       Date:  2008-06-03       Impact factor: 2.390

7.  Decoding visual information from a population of retinal ganglion cells.

Authors:  D K Warland; P Reinagel; M Meister
Journal:  J Neurophysiol       Date:  1997-11       Impact factor: 2.714

8.  Burst and oscillation as disparate neuronal properties.

Authors:  Y Kaneoke; J L Vitek
Journal:  J Neurosci Methods       Date:  1996-10       Impact factor: 2.390

9.  Neuronal population coding of movement direction.

Authors:  A P Georgopoulos; A B Schwartz; R E Kettner
Journal:  Science       Date:  1986-09-26       Impact factor: 47.728

10.  A high-performance brain-computer interface.

Authors:  Gopal Santhanam; Stephen I Ryu; Byron M Yu; Afsheen Afshar; Krishna V Shenoy
Journal:  Nature       Date:  2006-07-13       Impact factor: 49.962

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  4 in total

1.  A Fully Implantable, Programmable and Multimodal Neuroprocessor for Wireless, Cortically Controlled Brain-Machine Interface Applications.

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Journal:  J Signal Process Syst       Date:  2011-06-15

2.  Synergistic Coding by Cortical Neural Ensembles.

Authors:  Mehdi Aghagolzadeh; Seif Eldawlatly; Karim Oweiss
Journal:  IEEE Trans Inf Theory       Date:  2010-02-01       Impact factor: 2.501

3.  Strategies for high-performance resource-efficient compression of neural spike recordings.

Authors:  Palmi Thor Thorbergsson; Martin Garwicz; Jens Schouenborg; Anders J Johansson
Journal:  PLoS One       Date:  2014-04-11       Impact factor: 3.240

4.  Tracking single units in chronic, large scale, neural recordings for brain machine interface applications.

Authors:  Ahmed Eleryan; Mukta Vaidya; Joshua Southerland; Islam S Badreldin; Karthikeyan Balasubramanian; Andrew H Fagg; Nicholas Hatsopoulos; Karim Oweiss
Journal:  Front Neuroeng       Date:  2014-07-08
  4 in total

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