Literature DB >> 19191583

Efficient kinetic macrocyclization.

Wen Feng1, Kazuhiro Yamato, Liuqing Yang, Joseph S Ferguson, Lijian Zhong, Shuliang Zou, Lihua Yuan, Xiao Cheng Zeng, Bing Gong.   

Abstract

In this article, the highly efficient formation of a series of recently discovered aromatic oligoamide macrocycles consisting of six meta-linked residues is first discussed. The macrocycles, with their backbones rigidified by three-center hydrogen bonds, were found to form in high yields that deviate dramatically from the theoretically allowed value obtained from kinetic simulation of a typical kinetically controlled macrocyclization reaction. The folding of the uncyclized six-residue oligomeric precursors, which belong to a class of backbone-rigidified oligoamides that have been demonstrated by us to adopt well-defined crescent conformations, plays a critical role in the observed high efficiency. Out of two possible mechanisms, one is consistent with experimental results obtained from the coupling of crescent oligoamides of different lengths, which suggests a remote steric effect that discourages the formation of oligomers having lengths longer than the backbone of the six-residue precursors. The suggested mechanism is supported by the efficient formation of very large aromatic oligoamide macrocycles consisting of alternating meta- and para-linked residues. These large macrocycles, having H-bond-rigidified backbones and large internal lumens, are formed in high (>80%) yields on the basis of one-step, multicomponent macrocyclization reactions. The condensation of monomeric meta-diamines and a para-diacid chloride leads to the efficient formation of macrocycles with 14, 16, and 18 residues, corresponding to 70-, 80-, and 90-membered rings that contain internal cavities of 2.2, 2.5, and 2.9 nm across. In addition, the condensation between trimeric or pentameric diamines and a monomeric diacid chloride had resulted in the selective formation of single macrocyclic products with 16 or 18 residues. The efficient formation of the macrocycles, along with the absence of other noncyclic oligomeric and polymeric byproducts, is in sharp contrast to the poor yields associated with most kinetically controlled macrocyclization reactions. This system represents a rare example of highly efficient kinetic macrocyclization reactions involving large numbers of reacting units, which provides very large, shape-persistent macrocycles.

Entities:  

Year:  2009        PMID: 19191583     DOI: 10.1021/ja807935y

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  8 in total

1.  Flexibility Coexists with Shape-Persistence in Cyanostar Macrocycles.

Authors:  Yun Liu; Abhishek Singharoy; Christopher G Mayne; Arkajyoti Sengupta; Krishnan Raghavachari; Klaus Schulten; Amar H Flood
Journal:  J Am Chem Soc       Date:  2016-04-05       Impact factor: 15.419

2.  Large-scale and chromatography-free synthesis of an octameric quinoline-based aromatic amide helical foldamer.

Authors:  Ting Qi; Tiny Deschrijver; Ivan Huc
Journal:  Nat Protoc       Date:  2013-03-14       Impact factor: 13.491

3.  Diethyl 4,6-diacetamido-isophthalate.

Authors:  Peishen Li; Xianghui Li; Chao Chen; Lihua Yuan; Wen Feng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-22

4.  Kinetic analysis for macrocyclizations involving anionic template at the transition state.

Authors:  Vicente Martí-Centelles; M Isabel Burguete; Santiago V Luis
Journal:  ScientificWorldJournal       Date:  2012-04-22

5.  Redox-triggered self-assembly of gadolinium-based MRI probes for sensing reducing environment.

Authors:  Deju Ye; Prachi Pandit; Paul Kempen; Jianguo Lin; Liqin Xiong; Robert Sinclair; Brian Rutt; Jianghong Rao
Journal:  Bioconjug Chem       Date:  2014-07-21       Impact factor: 4.774

6.  Extremely strong tubular stacking of aromatic oligoamide macrocycles.

Authors:  Mark A Kline; Xiaoxi Wei; Ian J Horner; Rui Liu; Shuang Chen; Si Chen; Ka Yi Yung; Kazuhiro Yamato; Zhonghou Cai; Frank V Bright; Xiao Cheng Zeng; Bing Gong
Journal:  Chem Sci       Date:  2014-09-16       Impact factor: 9.825

7.  Ferrocene- and Biferrocene-Containing Macrocycles towards Single-Molecule Electronics.

Authors:  Lucy E Wilson; Christopher Hassenrück; Rainer F Winter; Andrew J P White; Tim Albrecht; Nicholas J Long
Journal:  Angew Chem Int Ed Engl       Date:  2017-05-12       Impact factor: 15.336

8.  Macrocyclic shape-persistency of cyclo[6]aramide results in enhanced multipoint recognition for the highly efficient template-directed synthesis of rotaxanes.

Authors:  Xiaowei Li; Xiangyang Yuan; Pengchi Deng; Lixi Chen; Yi Ren; Chengyuan Wang; Lixin Wu; Wen Feng; Bing Gong; Lihua Yuan
Journal:  Chem Sci       Date:  2016-11-22       Impact factor: 9.825

  8 in total

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