Literature DB >> 27014837

Flexibility Coexists with Shape-Persistence in Cyanostar Macrocycles.

Yun Liu1, Abhishek Singharoy2, Christopher G Mayne2, Arkajyoti Sengupta1, Krishnan Raghavachari1, Klaus Schulten2,3, Amar H Flood1.   

Abstract

Shape-persistent macrocycles are attractive functional targets for synthesis, molecular recognition, and hierarchical self-assembly. Such macrocycles are noncollapsible and geometrically well-defined, and they are traditionally characterized by having repeat units and low conformational flexibility. Here, we find it necessary to refine these ideas in the face of highly flexible yet shape-persistent macrocycles. A molecule is shape-persistent if it has a small change in shape when perturbed by external stimuli (e.g., heat, light, and redox chemistry). In support of this idea, we provide the first examination of the relationships between a macrocycle's shape persistence, its conformational space, and the resulting functions. We do this with a star-shaped macrocycle called cyanostar that is flexible as well as being shape-persistent. We employed molecular dynamics (MD), density functional theory (DFT), and NMR experiments. Considering a thermal bath as a stimulus, we found a single macrocycle has 332 accessible conformers with olefins undergoing rapid interconversion by up-down and in-out motions on short time scales (0.2 ns). These many interconverting conformations classify single cyanostars as flexible. To determine and confirm that cyanostars are shape-persistent, we show that they have a high 87% shape similarity across these conformations. To further test the idea, we use the binding of diglyme to the single macrocycle as guest-induced stimulation. This guest has almost no effect on the conformational space. However, formation of a 2:1 sandwich complex involving two macrocycles enhances rigidity and dramatically shifts the conformer distribution toward perfect bowls. Overall, the present study expands the scope of shape-persistent macrocycles to include flexible macrocycles if, and only if, their conformers have similar shapes.

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Year:  2016        PMID: 27014837      PMCID: PMC4957974          DOI: 10.1021/jacs.6b00712

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  102 in total

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Authors:  A Y Meyer; W G Richards
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5.  Bowl inversion of surface-adsorbed sumanene.

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Journal:  J Am Chem Soc       Date:  2014-09-18       Impact factor: 15.419

6.  2D supramolecular structures of a shape-persistent macrocycle and co-deposition with fullerene on HOPG.

Authors:  Ge-Bo Pan; Xiao-Hong Cheng; Sigurd Höger; Werner Freyland
Journal:  J Am Chem Soc       Date:  2006-04-05       Impact factor: 15.419

7.  Halogen bonding in water results in enhanced anion recognition in acyclic and rotaxane hosts.

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8.  Dipole-promoted and size-dependent cooperativity between pyridyl-containing triazolophanes and halides leads to persistent sandwich complexes with iodide.

Authors:  Yongjun Li; Maren Pink; Jonathan A Karty; Amar H Flood
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9.  Rigid macrocyclic triamides as anion receptors: anion-dependent binding stoichiometries and 1H chemical shift changes.

Authors:  Kihang Choi; Andrew D Hamilton
Journal:  J Am Chem Soc       Date:  2003-08-27       Impact factor: 15.419

10.  Exploring the Energy Landscapes of Cyclic Tetrapeptides with Discrete Path Sampling.

Authors:  Mark T Oakley; Roy L Johnston
Journal:  J Chem Theory Comput       Date:  2012-11-05       Impact factor: 6.006

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  8 in total

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2.  Inchworm movement of two rings switching onto a thread by biased Brownian diffusion represent a three-body problem.

Authors:  Christopher R Benson; Christopher Maffeo; Elisabeth M Fatila; Yun Liu; Edward G Sheetz; Aleksei Aksimentiev; Abhishek Singharoy; Amar H Flood
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-07       Impact factor: 11.205

3.  CHARMM-GUI MDFF/xMDFF Utilizer for Molecular Dynamics Flexible Fitting Simulations in Various Environments.

Authors:  Yifei Qi; Jumin Lee; Abhishek Singharoy; Ryan McGreevy; Klaus Schulten; Wonpil Im
Journal:  J Phys Chem B       Date:  2016-12-23       Impact factor: 2.991

4.  Macrocyclic shape-persistency of cyclo[6]aramide results in enhanced multipoint recognition for the highly efficient template-directed synthesis of rotaxanes.

Authors:  Xiaowei Li; Xiangyang Yuan; Pengchi Deng; Lixi Chen; Yi Ren; Chengyuan Wang; Lixin Wu; Wen Feng; Bing Gong; Lihua Yuan
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5.  Phosphate-phosphate oligomerization drives higher order co-assemblies with stacks of cyanostar macrocycles.

Authors:  Elisabeth M Fatila; Maren Pink; Eric B Twum; Jonathan A Karty; Amar H Flood
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6.  Recognition competes with hydration in anion-triggered monolayer formation of cyanostar supra-amphiphiles at aqueous interfaces.

Authors:  Liwei Yan; Ankur Saha; Wei Zhao; Jennifer F Neal; Yusheng Chen; Amar H Flood; Heather C Allen
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Review 7.  Rigidity and Flexibility in Rotaxanes and Their Relatives; On Being Stubborn and Easy-Going.

Authors:  Rachel E Fadler; Amar H Flood
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Review 8.  The Chaotropic Effect as an Assembly Motif in Chemistry.

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  8 in total

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