Literature DB >> 19189945

De Novo identification of single nucleotide mutations in Caenorhabditis elegans using array comparative genomic hybridization.

Jason S Maydan1, H Mark Okada, Stephane Flibotte, Mark L Edgley, Donald G Moerman.   

Abstract

Array comparative genomic hybridization (aCGH) has been used primarily to detect copy-number variants between two genomes. Here we report using aCGH to detect single nucleotide mutations on oligonucleotide microarrays with overlapping 50-mer probes. This technique represents a powerful method for rapidly detecting novel homozygous single nucleotide mutations in any organism with a sequenced reference genome.

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Year:  2009        PMID: 19189945      PMCID: PMC2666529          DOI: 10.1534/genetics.108.100065

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  16 in total

1.  LG II balancer chromosomes in Caenorhabditis elegans: mT1(II;III) and the mIn1 set of dominantly and recessively marked inversions.

Authors:  M L Edgley; D L Riddle
Journal:  Mol Genet Genomics       Date:  2001-11       Impact factor: 3.291

2.  Whole-genome sequencing and variant discovery in C. elegans.

Authors:  LaDeana W Hillier; Gabor T Marth; Aaron R Quinlan; David Dooling; Ginger Fewell; Derek Barnett; Paul Fox; Jarret I Glasscock; Matthew Hickenbotham; Weichun Huang; Vincent J Magrini; Ryan J Richt; Sacha N Sander; Donald A Stewart; Michael Stromberg; Eric F Tsung; Todd Wylie; Tim Schedl; Richard K Wilson; Elaine R Mardis
Journal:  Nat Methods       Date:  2008-01-20       Impact factor: 28.547

3.  Cis-regulatory mutations in the Caenorhabditis elegans homeobox gene locus cog-1 affect neuronal development.

Authors:  M Maggie O'Meara; Henry Bigelow; Stephane Flibotte; John F Etchberger; Donald G Moerman; Oliver Hobert
Journal:  Genetics       Date:  2009-02-02       Impact factor: 4.562

Review 4.  Mutagenesis.

Authors:  P Anderson
Journal:  Methods Cell Biol       Date:  1995       Impact factor: 1.441

5.  Efficient high-resolution deletion discovery in Caenorhabditis elegans by array comparative genomic hybridization.

Authors:  Jason S Maydan; Stephane Flibotte; Mark L Edgley; Joanne Lau; Rebecca R Selzer; Todd A Richmond; Nathan J Pofahl; James H Thomas; Donald G Moerman
Journal:  Genome Res       Date:  2007-01-31       Impact factor: 9.043

6.  Analysis of chromosome breakpoints in neuroblastoma at sub-kilobase resolution using fine-tiling oligonucleotide array CGH.

Authors:  Rebecca R Selzer; Todd A Richmond; Nathan J Pofahl; Roland D Green; Peggy S Eis; Prakash Nair; Arthur R Brothman; Raymond L Stallings
Journal:  Genes Chromosomes Cancer       Date:  2005-11       Impact factor: 5.006

7.  Optimal design of oligonucleotide microarrays for measurement of DNA copy-number.

Authors:  Andrew J Sharp; Andy Itsara; Ze Cheng; Can Alkan; Stuart Schwartz; Evan E Eichler
Journal:  Hum Mol Genet       Date:  2007-08-28       Impact factor: 6.150

8.  Genome-wide detection of polymorphisms at nucleotide resolution with a single DNA microarray.

Authors:  David Gresham; Douglas M Ruderfer; Stephen C Pratt; Joseph Schacherer; Maitreya J Dunham; David Botstein; Leonid Kruglyak
Journal:  Science       Date:  2006-03-09       Impact factor: 47.728

9.  Efficient target-selected mutagenesis in Caenorhabditis elegans: toward a knockout for every gene.

Authors:  Edwin Cuppen; Eelke Gort; Esther Hazendonk; Josine Mudde; José van de Belt; Isaäc J Nijman; Victor Guryev; Ronald H A Plasterk
Journal:  Genome Res       Date:  2007-04-06       Impact factor: 9.043

Review 10.  Comparing whole genomes using DNA microarrays.

Authors:  David Gresham; Maitreya J Dunham; David Botstein
Journal:  Nat Rev Genet       Date:  2008-04       Impact factor: 53.242

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  13 in total

1.  Whole-genome profiling of mutagenesis in Caenorhabditis elegans.

Authors:  Stephane Flibotte; Mark L Edgley; Iasha Chaudhry; Jon Taylor; Sarah E Neil; Aleksandra Rogula; Rick Zapf; Martin Hirst; Yaron Butterfield; Steven J Jones; Marco A Marra; Robert J Barstead; Donald G Moerman
Journal:  Genetics       Date:  2010-05-03       Impact factor: 4.562

2.  Ribosomal Protein S12e Has a Distinct Function in Cell Competition.

Authors:  Abhijit Kale; Zhejun Ji; Marianthi Kiparaki; Jorge Blanco; Gerard Rimesso; Stephane Flibotte; Nicholas E Baker
Journal:  Dev Cell       Date:  2018-01-08       Impact factor: 12.270

3.  Cis-regulatory mutations in the Caenorhabditis elegans homeobox gene locus cog-1 affect neuronal development.

Authors:  M Maggie O'Meara; Henry Bigelow; Stephane Flibotte; John F Etchberger; Donald G Moerman; Oliver Hobert
Journal:  Genetics       Date:  2009-02-02       Impact factor: 4.562

Review 4.  From genes to function: the C. elegans genetic toolbox.

Authors:  Thomas Boulin; Oliver Hobert
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2011-11-28       Impact factor: 5.814

Review 5.  Next-Generation Sequencing-Based Approaches for Mutation Mapping and Identification in Caenorhabditis elegans.

Authors:  Maria Doitsidou; Sophie Jarriault; Richard J Poole
Journal:  Genetics       Date:  2016-10       Impact factor: 4.562

Review 6.  Forward and reverse mutagenesis in C. elegans.

Authors:  Lena M Kutscher; Shai Shaham
Journal:  WormBook       Date:  2014-01-17

7.  C. elegans ADAMTS ADT-2 regulates body size by modulating TGFβ signaling and cuticle collagen organization.

Authors:  Thilini Fernando; Stephane Flibotte; Sheng Xiong; Jianghua Yin; Edlira Yzeiraj; Donald G Moerman; Alicia Meléndez; Cathy Savage-Dunn
Journal:  Dev Biol       Date:  2011-01-21       Impact factor: 3.582

8.  Genomic sequence of a mutant strain of Caenorhabditis elegans with an altered recombination pattern.

Authors:  Ann M Rose; Nigel J O'Neil; Mikhail Bilenky; Yaron S Butterfield; Nawar Malhis; Stephane Flibotte; Martin R Jones; Marco Marra; David L Baillie; Steven J M Jones
Journal:  BMC Genomics       Date:  2010-02-23       Impact factor: 3.969

9.  Localization of a guanylyl cyclase to chemosensory cilia requires the novel ciliary MYND domain protein DAF-25.

Authors:  Victor L Jensen; Nathan J Bialas; Sharon L Bishop-Hurley; Laurie L Molday; Katarzyna Kida; Phuong Anh T Nguyen; Oliver E Blacque; Robert S Molday; Michel R Leroux; Donald L Riddle
Journal:  PLoS Genet       Date:  2010-11-24       Impact factor: 5.917

10.  LAAT-1 is the lysosomal lysine/arginine transporter that maintains amino acid homeostasis.

Authors:  Bin Liu; Hongwei Du; Rachael Rutkowski; Anton Gartner; Xiaochen Wang
Journal:  Science       Date:  2012-07-20       Impact factor: 47.728

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