Literature DB >> 19185522

Narrow peaks and high dimensionalities: exploiting the advantages of random sampling.

Krzysztof Kazimierczuk1, Anna Zawadzka, Wiktor Koźmiński.   

Abstract

Level of artifacts in spectra obtained by Multidimensional Fourier Transform has been studied, considering randomly sampled signals of high dimensionality and long evolution times. It has been shown theoretically and experimentally, that this level is dependent on the number of time domain samples, but not on its relation to the number of points required in appropriate conventional experiment. Independence of the evolution time domain size (in the terms of both: dimensionality and evolution time reached), suggests that random sampling should be used rather to design new techniques with large time domain than to accelerate standard experiments. 5D HC(CC-TOCSY)CONH has been presented as the example of such approach. The feature of Multidimensional Fourier Transform, namely the possibility of calculating spectral values at arbitrary chosen frequency points, allowed easy examination of resulting spectrum. We present the example of such approach, referred to as Sparse Multidimensional Fourier Transform.

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Year:  2009        PMID: 19185522     DOI: 10.1016/j.jmr.2009.01.003

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  37 in total

1.  Sparsely sampled high-resolution 4-D experiments for efficient backbone resonance assignment of disordered proteins.

Authors:  Jie Wen; Jihui Wu; Pei Zhou
Journal:  J Magn Reson       Date:  2011-01-04       Impact factor: 2.229

2.  Speeding up sequence specific assignment of IDPs.

Authors:  Wolfgang Bermel; Ivano Bertini; Isabella C Felli; Leonardo Gonnelli; Wiktor Koźmiński; Alessandro Piai; Roberta Pierattelli; Jan Stanek
Journal:  J Biomol NMR       Date:  2012-06-10       Impact factor: 2.835

3.  Iterative algorithm of discrete Fourier transform for processing randomly sampled NMR data sets.

Authors:  Jan Stanek; Wiktor Koźmiński
Journal:  J Biomol NMR       Date:  2010-04-07       Impact factor: 2.835

4.  Strategy for complete NMR assignment of disordered proteins with highly repetitive sequences based on resolution-enhanced 5D experiments.

Authors:  Veronika Motáčková; Jiří Nováček; Anna Zawadzka-Kazimierczuk; Krzysztof Kazimierczuk; Lukáš Zídek; Hana Sanderová; Libor Krásný; Wiktor Koźmiński; Vladimír Sklenář
Journal:  J Biomol NMR       Date:  2010-10-02       Impact factor: 2.835

5.  4D non-uniformly sampled HCBCACON and ¹J(NCα)-selective HCBCANCO experiments for the sequential assignment and chemical shift analysis of intrinsically disordered proteins.

Authors:  Jiří Nováček; Noam Y Haba; Jordan H Chill; Lukáš Zídek; Vladimír Sklenář
Journal:  J Biomol NMR       Date:  2012-05-13       Impact factor: 2.835

6.  Efficient protocol for backbone and side-chain assignments of large, intrinsically disordered proteins: transient secondary structure analysis of 49.2 kDa microtubule associated protein 2c.

Authors:  Jiří Nováček; Lubomír Janda; Radka Dopitová; Lukáš Žídek; Vladimír Sklenář
Journal:  J Biomol NMR       Date:  2013-07-23       Impact factor: 2.835

7.  High-dimensionality 13C direct-detected NMR experiments for the automatic assignment of intrinsically disordered proteins.

Authors:  Wolfgang Bermel; Isabella C Felli; Leonardo Gonnelli; Wiktor Koźmiński; Alessandro Piai; Roberta Pierattelli; Anna Zawadzka-Kazimierczuk
Journal:  J Biomol NMR       Date:  2013-11-08       Impact factor: 2.835

8.  Accurate scoring of non-uniform sampling schemes for quantitative NMR.

Authors:  Phillip C Aoto; R Bryn Fenwick; Gerard J A Kroon; Peter E Wright
Journal:  J Magn Reson       Date:  2014-07-02       Impact factor: 2.229

9.  A non-uniformly sampled 4D HCC(CO)NH-TOCSY experiment processed using maximum entropy for rapid protein sidechain assignment.

Authors:  Mehdi Mobli; Alan S Stern; Wolfgang Bermel; Glenn F King; Jeffrey C Hoch
Journal:  J Magn Reson       Date:  2010-03-01       Impact factor: 2.229

10.  5D 13C-detected experiments for backbone assignment of unstructured proteins with a very low signal dispersion.

Authors:  Jiří Nováček; Anna Zawadzka-Kazimierczuk; Veronika Papoušková; Lukáš Zídek; Hana Sanderová; Libor Krásný; Wiktor Koźmiński; Vladimír Sklenář
Journal:  J Biomol NMR       Date:  2011-03-20       Impact factor: 2.835

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