Literature DB >> 19183794

Aptamer selection express: a novel method for rapid single-step selection and sensing of aptamers.

Maomian Fan1, Shelly Roper McBurnett, Carrie J Andrews, Amity M Allman, John G Bruno, Johnathan L Kiel.   

Abstract

Here we describe a new DNA capture element (DCE) sensing system, based on the quenching and dequenching of a double-stranded aptamer. This system shows very good sensitivity and thermal stability. While quenching, dequenching, and separating the DCE systems made from different aptamers (all selected by SELEX), an alternative method to rapidly select aptamers was developed-the Aptamer Selection Express (ASExp). This process has been used to select aptamers against different types of targets (Bacillus anthracis spores, Bacillus thuringiensis spores, MS-2 bacteriophage, ovalbumin, and botulinum neurotoxin). The DCE systems made from botulinum neurotoxin aptamers selected by ASExp have been investigated. The results of this investigation indicate that ASExp can be used to rapidly select aptamers for the DCE sensing system.

Entities:  

Keywords:  ASExp; DCE; SELEX; aptamer

Mesh:

Substances:

Year:  2008        PMID: 19183794      PMCID: PMC2628068     

Source DB:  PubMed          Journal:  J Biomol Tech        ISSN: 1524-0215


  16 in total

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Journal:  Chem Biol       Date:  2002-12

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Authors:  Razvan Nutiu; Yingfu Li
Journal:  J Am Chem Soc       Date:  2003-04-23       Impact factor: 15.419

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Authors:  Razvan Nutiu; Yingfu Li
Journal:  Chemistry       Date:  2004-04-19       Impact factor: 5.236

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Journal:  Science       Date:  1990-08-03       Impact factor: 47.728

Review 7.  Analytical applications of aptamers.

Authors:  S Tombelli; M Minunni; M Mascini
Journal:  Biosens Bioelectron       Date:  2004-12-16       Impact factor: 10.618

8.  Competitive displacement of DNA during surface hybridization.

Authors:  J Bishop; C Wilson; A M Chagovetz; S Blair
Journal:  Biophys J       Date:  2006-10-20       Impact factor: 4.033

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Journal:  Biotechnol Annu Rev       Date:  1995

10.  Anti-Francisella tularensis DNA aptamers detect tularemia antigen from different subspecies by Aptamer-Linked Immobilized Sorbent Assay.

Authors:  Jeevalatha Vivekananda; Johnathan L Kiel
Journal:  Lab Invest       Date:  2006-06       Impact factor: 5.662

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  14 in total

1.  In vitro selection of RNA aptamers that inhibit the activity of type A botulinum neurotoxin.

Authors:  Tzuu-Wang Chang; Michael Blank; Pavithra Janardhanan; Bal Ram Singh; Charlene Mello; Michael Blind; Shuowei Cai
Journal:  Biochem Biophys Res Commun       Date:  2010-05-07       Impact factor: 3.575

2.  Development of a membrane-bound random DNA sequence combinatorial array recognition surface (CARS).

Authors:  John G Bruno
Journal:  J Biomol Tech       Date:  2010-04

3.  Development of aptamer beacons for rapid presumptive detection of Bacillus spores.

Authors:  John G Bruno; Maria P Carrillo
Journal:  J Fluoresc       Date:  2012-01-05       Impact factor: 2.217

4.  Sensing the deadliest toxin: technologies for botulinum neurotoxin detection.

Authors:  Petr Capek; Tobin J Dickerson
Journal:  Toxins (Basel)       Date:  2010-01-07       Impact factor: 4.546

Review 5.  Smart functional nucleic acid chimeras: enabling tissue specific RNA targeting therapy.

Authors:  Lukas J Aaldering; Hossam Tayeb; Shilpa Krishnan; Susan Fletcher; Stephen D Wilton; Rakesh N Veedu
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

Review 6.  In vitro evolution of chemically-modified nucleic acid aptamers: Pros and cons, and comprehensive selection strategies.

Authors:  Farhana Lipi; Suxiang Chen; Madhuri Chakravarthy; Shilpa Rakesh; Rakesh N Veedu
Journal:  RNA Biol       Date:  2016-10-07       Impact factor: 4.652

7.  Rapid one-step selection method for generating nucleic acid aptamers: development of a DNA aptamer against α-bungarotoxin.

Authors:  Lasse H Lauridsen; Hadi A Shamaileh; Stacey L Edwards; Elena Taran; Rakesh N Veedu
Journal:  PLoS One       Date:  2012-07-30       Impact factor: 3.240

8.  Selective Evolution of Ligands by Exponential Enrichment to Identify RNA Aptamers against Shiga Toxins.

Authors:  Sreerupa Challa; Saul Tzipori; Abhineet Sheoran
Journal:  J Nucleic Acids       Date:  2014-04-15

Review 9.  Aptamer-Based Technologies in Foodborne Pathogen Detection.

Authors:  Jun Teng; Fang Yuan; Yingwang Ye; Lei Zheng; Li Yao; Feng Xue; Wei Chen; Baoguang Li
Journal:  Front Microbiol       Date:  2016-09-12       Impact factor: 5.640

Review 10.  Predicting the Uncertain Future of Aptamer-Based Diagnostics and Therapeutics.

Authors:  John G Bruno
Journal:  Molecules       Date:  2015-04-16       Impact factor: 4.411

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