Literature DB >> 15854817

Analytical applications of aptamers.

S Tombelli1, M Minunni, M Mascini.   

Abstract

So far, several bio-analytical methods have used nucleic acid probes to detect specific sequences in RNA or DNA targets through hybridisation. More recently, specific nucleic acids, aptamers, selected from random sequence pools, have been shown to bind non-nucleic acid targets, such as small molecules or proteins. The development of in vitro selection and amplification techniques has allowed the identification of specific aptamers, which bind to the target molecules with high affinity. Many small organic molecules with molecular weights from 100 to 10,000 Da have been shown to be good targets for selection. Moreover, aptamers can be selected against difficult target haptens, such as toxins or prions. The selected aptamers can bind to their targets with high affinity and even discriminate between closely related targets. Aptamers can thus be considered as a valid alternative to antibodies or other bio-mimetic receptors, for the development of biosensors and other analytical methods. The production of aptamers is commonly performed by the SELEX (systematic evolution of ligands by exponential enrichment) process, which, starting from large libraries of oligonucleotides, allows the isolation of large amounts of functional nucleic acids by an iterative process of in vitro selection and subsequent amplification through polymerase chain reaction. Aptamers are suitable for applications based on molecular recognition as analytical, diagnostic and therapeutic tools. In this review, the main analytical methods, which have been developed using aptamers, will be discussed together with an overview on the aptamer selection process.

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Year:  2004        PMID: 15854817     DOI: 10.1016/j.bios.2004.11.006

Source DB:  PubMed          Journal:  Biosens Bioelectron        ISSN: 0956-5663            Impact factor:   10.618


  127 in total

1.  Comparative crystallization and preliminary X-ray diffraction studies of locked nucleic acid and RNA stems of a tenascin C-binding aptamer.

Authors:  Charlotte Förster; Arnd B E Brauer; Svenja Brode; Kathrin S Schmidt; Markus Perbandt; Arne Meyer; Wojciech Rypniewski; Christian Betzel; Jens Kurreck; Jens P Fürste; Volker A Erdmann
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-06-10

2.  A mathematical analysis of SELEX.

Authors:  Howard A Levine; Marit Nilsen-Hamilton
Journal:  Comput Biol Chem       Date:  2007-01-10       Impact factor: 2.877

3.  Label-Free Impedance Biosensors: Opportunities and Challenges.

Authors:  Jonathan S Daniels; Nader Pourmand
Journal:  Electroanalysis       Date:  2007-05-16       Impact factor: 3.223

4.  Aptamer selection express: a novel method for rapid single-step selection and sensing of aptamers.

Authors:  Maomian Fan; Shelly Roper McBurnett; Carrie J Andrews; Amity M Allman; John G Bruno; Johnathan L Kiel
Journal:  J Biomol Tech       Date:  2008-12

Review 5.  Guide to Selecting a Biorecognition Element for Biosensors.

Authors:  Marissa A Morales; Jeffrey Mark Halpern
Journal:  Bioconjug Chem       Date:  2018-09-28       Impact factor: 4.774

6.  Tracking the emergence of high affinity aptamers for rhVEGF165 during capillary electrophoresis-systematic evolution of ligands by exponential enrichment using high throughput sequencing.

Authors:  Meng Jing; Michael T Bowser
Journal:  Anal Chem       Date:  2013-11-01       Impact factor: 6.986

Review 7.  Aptamer-based approaches for the detection of waterborne pathogens.

Authors:  Archana Vishwakarma; Roshni Lal; Mohandass Ramya
Journal:  Int Microbiol       Date:  2021-01-06       Impact factor: 2.479

8.  Unraveling the effect of the aptamer complementary element on the performance of duplexed aptamers: a thermodynamic study.

Authors:  Annelies Dillen; Wouter Vandezande; Devin Daems; Jeroen Lammertyn
Journal:  Anal Bioanal Chem       Date:  2021-06-10       Impact factor: 4.142

Review 9.  Aptamer-encoded nanopore for ultrasensitive detection of bioterrorist agent ricin at single-molecule resolution.

Authors:  Li-Qun Gu; Shu Ding; Changlu Gao
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2009

10.  Design principles for ligand-sensing, conformation-switching ribozymes.

Authors:  Xi Chen; Andrew D Ellington
Journal:  PLoS Comput Biol       Date:  2009-12-24       Impact factor: 4.475

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