Literature DB >> 19177369

Mechanical unfolding of covalently linked GroES: evidence of structural subunit intermediates.

Isao Sakane1, Kunihiro Hongo, Tomohiro Mizobata, Yasushi Kawata.   

Abstract

It is difficult to determine the structural stability of the individual subunits or protomers of many proteins in the cell that exist in an oligomeric or complexed state. In this study, we used single-molecule force spectroscopy on seven subunits of covalently linked cochaperonin GroES (ESC7) to evaluate the structural stability of the subunit. A modified form of ESC7 was immobilized on a mica surface. The force-extension profile obtained from the mechanical unfolding of this ESC7 showed a distinctive sawtooth pattern that is typical for multimodular proteins. When analyzed according to the worm-like chain model, the contour lengths calculated from the peaks in the profile suggested that linked-GroES subunits unfold in distinct steps after the oligomeric ring structure of ESC7 is disrupted. The evidence that structured subunits of ESC7 withstand external force to some extent even after the perturbation of the oligomeric ring structure suggests that a stable monomeric intermediate is an important component of the equilibrium unfolding reaction of GroES.

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Year:  2009        PMID: 19177369      PMCID: PMC2708039          DOI: 10.1002/pro.7

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  27 in total

1.  Solid-state synthesis and mechanical unfolding of polymers of T4 lysozyme.

Authors:  G Yang; C Cecconi; W A Baase; I R Vetter; W A Breyer; J A Haack; B W Matthews; F W Dahlquist; C Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-04       Impact factor: 11.205

2.  Can non-mechanical proteins withstand force? Stretching barnase by atomic force microscopy and molecular dynamics simulation.

Authors:  R B Best; B Li; A Steward; V Daggett; J Clarke
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

3.  Mediatorless biosensor for H(2)O(2) based on recombinant forms of horseradish peroxidase directly adsorbed on polycrystalline gold.

Authors:  E E Ferapontova; V G Grigorenko; A M Egorov; T Börchers; T Ruzgas; L Gorton
Journal:  Biosens Bioelectron       Date:  2001-05       Impact factor: 10.618

4.  The mechanical stability of ubiquitin is linkage dependent.

Authors:  Mariano Carrion-Vazquez; Hongbin Li; Hui Lu; Piotr E Marszalek; Andres F Oberhauser; Julio M Fernandez
Journal:  Nat Struct Biol       Date:  2003-08-17

5.  Effects of the chaperonin GroE on the refolding of tryptophanase from Escherichia coli. Refolding is enhanced in the presence of ADP.

Authors:  T Mizobata; Y Akiyama; K Ito; N Yumoto; Y Kawata
Journal:  J Biol Chem       Date:  1992-09-05       Impact factor: 5.157

6.  Structural stability and solution structure of chaperonin GroES heptamer studied by synchrotron small-angle X-ray scattering.

Authors:  Takashi Higurashi; Yuzuru Hiragi; Kaoru Ichimura; Yasutaka Seki; Kunitsugu Soda; Tomohiro Mizobata; Yasushi Kawata
Journal:  J Mol Biol       Date:  2003-10-24       Impact factor: 5.469

7.  Mechanical unfolding of a titin Ig domain: structure of unfolding intermediate revealed by combining AFM, molecular dynamics simulations, NMR and protein engineering.

Authors:  Susan B Fowler; Robert B Best; José L Toca Herrera; Trevor J Rutherford; Annette Steward; Emanuele Paci; Martin Karplus; Jane Clarke
Journal:  J Mol Biol       Date:  2002-09-27       Impact factor: 5.469

Review 8.  Conformational stability of dimeric proteins: quantitative studies by equilibrium denaturation.

Authors:  K E Neet; D E Timm
Journal:  Protein Sci       Date:  1994-12       Impact factor: 6.725

9.  Entropic elasticity of lambda-phage DNA.

Authors:  C Bustamante; J F Marko; E D Siggia; S Smith
Journal:  Science       Date:  1994-09-09       Impact factor: 47.728

10.  Structural stability of covalently linked GroES heptamer: advantages in the formation of oligomeric structure.

Authors:  Isao Sakane; Kunihiro Hongo; Fumihiro Motojima; Shigeto Murayama; Tomohiro Mizobata; Yasushi Kawata
Journal:  J Mol Biol       Date:  2007-01-20       Impact factor: 5.469

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  1 in total

1.  Prying open single GroES ring complexes by force reveals cooperativity across domains.

Authors:  Akiko Ikeda-Kobayashi; Yukinori Taniguchi; David J Brockwell; Emanuele Paci; Masaru Kawakami
Journal:  Biophys J       Date:  2012-04-18       Impact factor: 4.033

  1 in total

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