Literature DB >> 14556748

Structural stability and solution structure of chaperonin GroES heptamer studied by synchrotron small-angle X-ray scattering.

Takashi Higurashi1, Yuzuru Hiragi, Kaoru Ichimura, Yasutaka Seki, Kunitsugu Soda, Tomohiro Mizobata, Yasushi Kawata.   

Abstract

The GroES protein from Escherichia coli is a well-known member of the molecular chaperones. GroES consists of seven identical 10 kDa subunits, and forms a dome-like oligomeric structure. In order to obtain information on the structural stability and unfolding-refolding mechanism of GroES protein, especially at protein concentrations (0.4-1.2 mM GroES monomer) that would mimic heat stress conditions in vivo, we have performed synchrotron small-angle X-ray scattering (SAXS) experiments. Surprisingly, in spite of the high protein concentration, reversibility in the unfolding-refolding reaction was confirmed by SAXS experiments structurally. Although the unfolding-refolding reaction showed an apparent single transition with a Cm of 1.1 M guanidium hydrochloride, a more detailed analysis of this transition demonstrated that the unfolding mechanism could be best explained by a sequential three-state model, which consists of native heptamer, dissociated monomer, and unfolded monomer. Together with our previous result that GroES unfolded completely via a partially folded monomer according to a three-state model at low protein concentration (5 microM monomer), the unfolding-refolding mechanism of GroES protein could be explained uniformly by the three-state model from low to high protein concentrations. Furthermore, to clarify an ambiguity of the native GroES structure in solution, especially mobile loop structures, we have estimated a solution structure of GroES using SAXS profiles obtained from experiments and simulation analysis. The result suggested that the native structure of GroES in solution was very similar to that seen in GroES-GroEL complex determined by crystallography.

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Year:  2003        PMID: 14556748     DOI: 10.1016/j.jmb.2003.08.056

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  8 in total

1.  Asymmetry of the GroEL-GroES complex under physiological conditions as revealed by small-angle x-ray scattering.

Authors:  Tomonao Inobe; Kazunobu Takahashi; Kosuke Maki; Sawako Enoki; Kiyoto Kamagata; Akio Kadooka; Munehito Arai; Kunihiro Kuwajima
Journal:  Biophys J       Date:  2007-11-02       Impact factor: 4.033

2.  Mechanical unfolding of covalently linked GroES: evidence of structural subunit intermediates.

Authors:  Isao Sakane; Kunihiro Hongo; Tomohiro Mizobata; Yasushi Kawata
Journal:  Protein Sci       Date:  2009-01       Impact factor: 6.725

3.  Substrate-induced change in the quaternary structure of type 2 isopentenyl diphosphate isomerase from Sulfolobus shibatae.

Authors:  Hitomi Nakatani; Shuichiro Goda; Hideaki Unno; Takuya Nagai; Tohru Yoshimura; Hisashi Hemmi
Journal:  J Bacteriol       Date:  2012-04-13       Impact factor: 3.490

4.  Covalent structural changes in unfolded GroES that lead to amyloid fibril formation detected by NMR: insight into intrinsically disordered proteins.

Authors:  Hisanori Iwasa; Shunsuke Meshitsuka; Kunihiro Hongo; Tomohiro Mizobata; Yasushi Kawata
Journal:  J Biol Chem       Date:  2011-04-20       Impact factor: 5.157

5.  Suppression of amyloid fibrils using the GroEL apical domain.

Authors:  Bimlesh Ojha; Naoya Fukui; Kunihiro Hongo; Tomohiro Mizobata; Yasushi Kawata
Journal:  Sci Rep       Date:  2016-08-04       Impact factor: 4.379

6.  Beyond Antibodies: Development of a Novel Protein Scaffold Based on Human Chaperonin 10.

Authors:  Abdulkarim M Alsultan; David Y Chin; Christopher B Howard; Christopher J de Bakker; Martina L Jones; Stephen M Mahler
Journal:  Sci Rep       Date:  2016-11-22       Impact factor: 4.379

7.  Importance of the C-terminal histidine residues of Helicobacter pylori GroES for Toll-like receptor 4 binding and interleukin-8 cytokine production.

Authors:  Haur Lee; Yu-Lin Su; Bo-Shih Huang; Feng-Tse Hsieh; Ya-Hui Chang; Shiou-Ru Tzeng; Chun-Hua Hsu; Po-Tsang Huang; Kuo-Long Lou; Yeng-Tseng Wang; Lu-Ping Chow
Journal:  Sci Rep       Date:  2016-11-21       Impact factor: 4.379

8.  Formation of the chaperonin complex studied by 2D NMR spectroscopy.

Authors:  Toshio Takenaka; Takashi Nakamura; Saeko Yanaka; Maho Yagi-Utsumi; Mahesh S Chandak; Kazunobu Takahashi; Subhankar Paul; Koki Makabe; Munehito Arai; Koichi Kato; Kunihiro Kuwajima
Journal:  PLoS One       Date:  2017-10-23       Impact factor: 3.240

  8 in total

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