Literature DB >> 19157855

Linking folding and binding.

Peter E Wright1, H Jane Dyson.   

Abstract

Many cellular proteins are intrinsically disordered and undergo folding, in whole or in part, upon binding to their physiological targets. The past few years have seen an exponential increase in papers describing characterization of intrinsically disordered proteins, both free and bound to targets. Although NMR spectroscopy remains the favored tool, a number of new biophysical techniques are proving exceptionally useful in defining the limits of the conformational ensembles. Advances have been made in prediction of the recognition elements in disordered proteins, in elucidating the kinetics and mechanism of the coupled folding and binding process, and in understanding the role of post-translational modifications in tuning the biological response. Here we review these and other recent advances that are providing new insights into the conformational propensities and interactions of intrinsically disordered proteins and are beginning to reveal general principles underlying their biological functions.

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Year:  2009        PMID: 19157855      PMCID: PMC2675572          DOI: 10.1016/j.sbi.2008.12.003

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  63 in total

1.  Mutual synergistic folding in recruitment of CBP/p300 by p160 nuclear receptor coactivators.

Authors:  Stephen J Demarest; Maria Martinez-Yamout; John Chung; Hongwu Chen; Wei Xu; H Jane Dyson; Ronald M Evans; Peter E Wright
Journal:  Nature       Date:  2002-01-31       Impact factor: 49.962

Review 2.  Coupling of folding and binding for unstructured proteins.

Authors:  H Jane Dyson; Peter E Wright
Journal:  Curr Opin Struct Biol       Date:  2002-02       Impact factor: 6.809

Review 3.  Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm.

Authors:  P E Wright; H J Dyson
Journal:  J Mol Biol       Date:  1999-10-22       Impact factor: 5.469

4.  FlgM gains structure in living cells.

Authors:  Matthew M Dedmon; Chetan N Patel; Gregory B Young; Gary J Pielak
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-23       Impact factor: 11.205

5.  Simulating disorder-order transitions in molecular recognition of unstructured proteins: where folding meets binding.

Authors:  Gennady M Verkhivker; Djamal Bouzida; Daniel K Gehlhaar; Paul A Rejto; Stephan T Freer; Peter W Rose
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-15       Impact factor: 11.205

6.  Kinetics of folding and binding of an intrinsically disordered protein: the inhibitor of yeast aspartic proteinase YPrA.

Authors:  Ranjani Narayanan; Omjoy K Ganesh; Arthur S Edison; Stephen J Hagen
Journal:  J Am Chem Soc       Date:  2008-08-06       Impact factor: 15.419

7.  Functional consequences of preorganized helical structure in the intrinsically disordered cell-cycle inhibitor p27(Kip1).

Authors:  Ewa A Bienkiewicz; Joshua N Adkins; Kevin J Lumb
Journal:  Biochemistry       Date:  2002-01-22       Impact factor: 3.162

8.  The importance of intrinsic disorder for protein phosphorylation.

Authors:  Lilia M Iakoucheva; Predrag Radivojac; Celeste J Brown; Timothy R O'Connor; Jason G Sikes; Zoran Obradovic; A Keith Dunker
Journal:  Nucleic Acids Res       Date:  2004-02-11       Impact factor: 16.971

9.  Packing, specificity, and mutability at the binding interface between the p160 coactivator and CREB-binding protein.

Authors:  Stephen J Demarest; Songpon Deechongkit; H Jane Dyson; Ronald M Evans; Peter E Wright
Journal:  Protein Sci       Date:  2004-01       Impact factor: 6.725

10.  Roles of phosphorylation and helix propensity in the binding of the KIX domain of CREB-binding protein by constitutive (c-Myb) and inducible (CREB) activators.

Authors:  Tsaffrir Zor; Bernhard M Mayr; H Jane Dyson; Marc R Montminy; Peter E Wright
Journal:  J Biol Chem       Date:  2002-08-23       Impact factor: 5.157

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  432 in total

1.  Is a malleable protein necessarily highly dynamic? The hydrophobic core of the nuclear coactivator binding domain is well ordered.

Authors:  Magnus Kjaergaard; Flemming M Poulsen; Kaare Teilum
Journal:  Biophys J       Date:  2012-04-03       Impact factor: 4.033

2.  Nucleocytoplasmic transport: a role for nonspecific competition in karyopherin-nucleoporin interactions.

Authors:  Jaclyn Tetenbaum-Novatt; Loren E Hough; Roxana Mironska; Anna Sophia McKenney; Michael P Rout
Journal:  Mol Cell Proteomics       Date:  2012-02-22       Impact factor: 5.911

Review 3.  Allosteric modulators of steroid hormone receptors: structural dynamics and gene regulation.

Authors:  Raj Kumar; Iain J McEwan
Journal:  Endocr Rev       Date:  2012-03-20       Impact factor: 19.871

Review 4.  Flexibility and binding affinity in protein-ligand, protein-protein and multi-component protein interactions: limitations of current computational approaches.

Authors:  Pierre Tuffery; Philippe Derreumaux
Journal:  J R Soc Interface       Date:  2011-10-12       Impact factor: 4.118

5.  From the Cover: Charge interactions can dominate the dimensions of intrinsically disordered proteins.

Authors:  Sonja Müller-Späth; Andrea Soranno; Verena Hirschfeld; Hagen Hofmann; Stefan Rüegger; Luc Reymond; Daniel Nettels; Benjamin Schuler
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-16       Impact factor: 11.205

6.  To fold or expand--a charged question.

Authors:  Jeremy L England; Gilad Haran
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-03       Impact factor: 11.205

Review 7.  Fuzzy complexes of myelin basic protein: NMR spectroscopic investigations of a polymorphic organizational linker of the central nervous system.

Authors:  David S Libich; Mumdooh A M Ahmed; Ligang Zhong; Vladimir V Bamm; Vladimir Ladizhansky; George Harauz
Journal:  Biochem Cell Biol       Date:  2010-04       Impact factor: 3.626

8.  Functional dissection of an intrinsically disordered protein: understanding the roles of different domains of Knr4 protein in protein-protein interactions.

Authors:  Adilia Dagkessamanskaia; Fabien Durand; Vladimir N Uversky; Matteo Binda; Frédéric Lopez; Karim El Azzouzi; Jean Marie Francois; Hélène Martin-Yken
Journal:  Protein Sci       Date:  2010-07       Impact factor: 6.725

9.  Temperature-dependent structural changes in intrinsically disordered proteins: formation of alpha-helices or loss of polyproline II?

Authors:  Magnus Kjaergaard; Ann-Beth Nørholm; Ruth Hendus-Altenburger; Stine F Pedersen; Flemming M Poulsen; Birthe B Kragelund
Journal:  Protein Sci       Date:  2010-08       Impact factor: 6.725

10.  Membrane insertion of a Tc toxin in near-atomic detail.

Authors:  Christos Gatsogiannis; Felipe Merino; Daniel Prumbaum; Daniel Roderer; Franziska Leidreiter; Dominic Meusch; Stefan Raunser
Journal:  Nat Struct Mol Biol       Date:  2016-08-29       Impact factor: 15.369

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