Literature DB >> 19139239

Image analysis software based on color segmentation for characterization of viability and physiological activity of biofilms.

Luis E Chávez de Paz1.   

Abstract

The novel image analysis software package bioImage_L was tested to calculate biofilm structural parameters in oral biofilms stained with dual-channel fluorescent markers. By identifying color tonalities in situ, the software independently processed the color subpopulations and characterized the viability and metabolic activity of biofilms.

Mesh：

Year:  2009        PMID： 19139239      PMCID： PMC2655470          DOI： 10.1128/AEM.02000-08

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  12 in total

1.  Quantifying biofilm structure using image analysis.

Authors:  X Yang; H Beyenal; G Harkin; Z Lewandowski
Journal:  J Microbiol Methods       Date:  2000-01       Impact factor: 2.363

2.  Objective threshold selection procedure (OTS) for segmentation of scanning laser confocal microscope images.

Authors:  J B Xavier; A Schnell; S Wuertz; R Palmer; D C White; J S Almeida
Journal:  J Microbiol Methods       Date:  2001-11       Impact factor: 2.363

3.  Quantification of biofilm structures by the novel computer program COMSTAT.

Authors:  A Heydorn; A T Nielsen; M Hentzer; C Sternberg; M Givskov; B K Ersbøll; S Molin
Journal:  Microbiology       Date:  2000-10       Impact factor: 2.777

4.  Three-dimensional biofilm structure quantification.

Authors:  Haluk Beyenal; Conrad Donovan; Zbigniew Lewandowski; Gary Harkin
Journal:  J Microbiol Methods       Date:  2004-12       Impact factor: 2.363

5.  Relationship between intracellular pH and proton mobility in rat and guinea-pig ventricular myocytes.

Authors:  Pawel Swietach; Richard D Vaughan-Jones
Journal:  J Physiol       Date:  2005-05-26       Impact factor: 5.182

6.  daime, a novel image analysis program for microbial ecology and biofilm research.

Authors:  Holger Daims; Sebastian Lücker; Michael Wagner
Journal:  Environ Microbiol       Date:  2006-02       Impact factor: 5.491

7.  Six-color segmentation of multicolor images in the infection studies of Listeria monocytogenes.

Authors:  Bin Ma; Feng He; Jadwiga Jablonska; Simon Winkelbach; Werner Lindenmaier; An-Ping Zeng; Kurt E J Dittmar
Journal:  Microsc Res Tech       Date:  2007-02       Impact factor: 2.769

8.  Oral bacteria in biofilms exhibit slow reactivation from nutrient deprivation.

Authors:  Luis E Chávez de Paz; Ian R Hamilton; Gunnel Svensäter
Journal:  Microbiology       Date:  2008-07       Impact factor: 2.777

9.  Salivary gel-forming mucin MUC5B--a nutrient for dental plaque bacteria.

Authors:  C Wickström; G Svensäter
Journal:  Oral Microbiol Immunol       Date:  2008-06

10.  Analysis of a marine phototrophic biofilm by confocal laser scanning microscopy using the new image quantification software PHLIP.

Authors:  Lukas N Mueller; Jody F C de Brouwer; Jonas S Almeida; Lucas J Stal; João B Xavier
Journal:  BMC Ecol       Date:  2006-01-16       Impact factor: 2.964
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  44 in total

1.  Biofilm image reconstruction for assessing structural parameters.

Authors:  Ryan Renslow; Zbigniew Lewandowski; Haluk Beyenal
Journal:  Biotechnol Bioeng       Date:  2011-01-28       Impact factor: 4.530

2.  Antimicrobial effect of chitosan nanoparticles on streptococcus mutans biofilms.

Authors:  Luis E Chávez de Paz; Anton Resin; Kenneth A Howard; Duncan S Sutherland; Peter L Wejse
Journal:  Appl Environ Microbiol       Date:  2011-04-15       Impact factor: 4.792

3.  CMEIAS color segmentation: an improved computing technology to process color images for quantitative microbial ecology studies at single-cell resolution.

Authors:  Colin A Gross; Chandan K Reddy; Frank B Dazzo
Journal:  Microb Ecol       Date:  2009-12-19       Impact factor: 4.552

4.  Three-dimensional biofilm properties on dental bonding agent with varying quaternary ammonium charge densities.

Authors:  Han Zhou; Huaibing Liu; Michael D Weir; Mark A Reynolds; Ke Zhang; Hockin H K Xu
Journal:  J Dent       Date:  2016-07-26       Impact factor: 4.379

5.  Altered host cell-bacteria interaction due to nanoparticle interaction with a bacterial biofilm.

Authors:  Tara D Raftery; Heidi Lindler; Tamara L McNealy
Journal:  Microb Ecol       Date:  2012-09-30       Impact factor: 4.552

6.  Dual Rinse® HEDP increases the surface tension of NaOCl but may increase its dentin disinfection efficacy.

Authors:  Luciano Giardino; Massimo Del Fabbro; Marco Morra; Thais Pereira; Flaviana Bombarda de Andrade; Paolo Savadori; Luigi Generali
Journal:  Odontology       Date:  2019-06-13       Impact factor: 2.634

7.  Regulation of bacteriocin production and cell death by the VicRK signaling system in Streptococcus mutans.

Authors:  D B Senadheera; M Cordova; E A Ayala; L E Chávez de Paz; K Singh; J S Downey; G Svensäter; S D Goodman; D G Cvitkovitch
Journal:  J Bacteriol       Date:  2012-01-06       Impact factor: 3.490

8.  Effect of water-aging on the antimicrobial activities of an ORMOSIL-containing orthodontic acrylic resin.

Authors:  Shi-Qiang Gong; D Jeevanie Epasinghe; Bin Zhou; Li-Na Niu; Kirk A Kimmerling; Frederick A Rueggeberg; Cynthia K Y Yiu; Jing Mao; David H Pashley; Franklin R Tay
Journal:  Acta Biomater       Date:  2013-02-26       Impact factor: 8.947

9.  Identification of novel LPXTG-linked surface proteins from Streptococcus gordonii.

Authors:  Julia R Davies; Gunnel Svensäter; Mark C Herzberg
Journal:  Microbiology (Reading)       Date:  2009-04-21       Impact factor: 2.777

10.  l-Methionine anti-biofilm activity against Pseudomonas aeruginosa is enhanced by the cystic fibrosis transmembrane conductance regulator potentiator, ivacaftor.

Authors:  Do-Yeon Cho; Dong-Jin Lim; Calvin Mackey; Christopher G Weeks; Jaime A Peña Garcia; Daniel Skinner; Jessica W Grayson; Harrison S Hill; David K Alexander; Shaoyan Zhang; Bradford A Woodworth
Journal:  Int Forum Allergy Rhinol       Date:  2018-02-07       Impact factor: 3.858
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