Literature DB >> 19134471

Diffusion, exclusion, and specific binding in a large channel: a study of OmpF selectivity inversion.

Antonio Alcaraz1, Ekaterina M Nestorovich, M Lidón López, Elena García-Giménez, Sergey M Bezrukov, Vicente M Aguilella.   

Abstract

We find that moderate cationic selectivity of the general bacterial porin OmpF in sodium and potassium chloride solutions is inversed to anionic selectivity in concentrated solutions of barium, calcium, nickel, and magnesium chlorides. To understand the origin of this phenomenon, we consider several factors, which include the binding of divalent cations, electrostatic and steric exclusion of differently charged and differently sized ions, size-dependent hydrodynamic hindrance, electrokinetic effects, and significant "anionic" diffusion potential for bulk solutions of chlorides of divalent cations. Though all these factors contribute to the measured selectivity of this large channel, the observed selectivity inversion is mostly due to the following two. First, binding divalent cations compensates, or even slightly overcompensates, for the negative charge of the OmpF protein, which is known to be the main cause of cationic selectivity in sodium and potassium chloride solutions. Second, the higher anionic (versus cationic) transport rate expected for bulk solutions of chloride salts of divalent cations is the leading cause of the measured anionic selectivity of the channel. Interestingly, at high concentrations the binding of cations does not show any pronounced specificity within the divalent series because the reversal potentials measured in the series correlate well with the corresponding bulk diffusion potentials. Thus our study shows that, in contrast to the highly selective channels of neurophysiology that employ mostly the exclusion mechanism, quite different factors account for the selectivity of large channels. The elucidation of these factors is essential for understanding large channel selectivity and its regulation in vivo.

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Year:  2009        PMID: 19134471      PMCID: PMC2710040          DOI: 10.1016/j.bpj.2008.09.024

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  43 in total

1.  Role of charged residues at the OmpF porin channel constriction probed by mutagenesis and simulation.

Authors:  P S Phale; A Philippsen; C Widmer; V P Phale; J P Rosenbusch; T Schirmer
Journal:  Biochemistry       Date:  2001-05-29       Impact factor: 3.162

Review 2.  Molecular basis of bacterial outer membrane permeability revisited.

Authors:  Hiroshi Nikaido
Journal:  Microbiol Mol Biol Rev       Date:  2003-12       Impact factor: 11.056

3.  Permeation properties of an engineered bacterial OmpF porin containing the EEEE-locus of Ca2+ channels.

Authors:  Henk Miedema; Anita Meter-Arkema; Jenny Wierenga; John Tang; Bob Eisenberg; Wolfgang Nonner; Hans Hektor; Dirk Gillespie; Wim Meijberg
Journal:  Biophys J       Date:  2004-08-23       Impact factor: 4.033

4.  Direct observation of charge inversion by multivalent ions as a universal electrostatic phenomenon.

Authors:  K Besteman; M A G Zevenbergen; H A Heering; S G Lemay
Journal:  Phys Rev Lett       Date:  2004-10-20       Impact factor: 9.161

5.  On the nature of liquid junction and membrane potentials.

Authors:  John W Perram; Peter J Stiles
Journal:  Phys Chem Chem Phys       Date:  2006-08-17       Impact factor: 3.676

Review 6.  Proteins, channels and crowded ions.

Authors:  Bob Eisenberg
Journal:  Biophys Chem       Date:  2003       Impact factor: 2.352

7.  Functional subconformations in protein folding: evidence from single-channel experiments.

Authors:  Lisen Kullman; Philip A Gurnev; Mathias Winterhalter; Sergey M Bezrukov
Journal:  Phys Rev Lett       Date:  2006-01-23       Impact factor: 9.161

8.  Negative incremental resistance induced by calcium in asymmetric nanopores.

Authors:  Zuzanna S Siwy; Matthew R Powell; Eric Kalman; R Dean Astumian; Robert S Eisenberg
Journal:  Nano Lett       Date:  2006-03       Impact factor: 11.189

9.  Ionic selectivity of pores formed by the matrix protein (porin) of Escherichia coli.

Authors:  R Benz; K Janko; P Läuger
Journal:  Biochim Biophys Acta       Date:  1979-03-08

10.  Probing alamethicin channels with water-soluble polymers. Effect on conductance of channel states.

Authors:  S M Bezrukov; I Vodyanoy
Journal:  Biophys J       Date:  1993-01       Impact factor: 4.033

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  23 in total

1.  Ionic partition and transport in multi-ionic channels: a molecular dynamics simulation study of the OmpF bacterial porin.

Authors:  Jordi Faraudo; Carles Calero; Marcel Aguilella-Arzo
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

2.  Molecular control of ionic conduction in polymer nanopores.

Authors:  Eduardo R Cruz-Chu; Thorsten Ritz; Zuzanna S Siwy; Klaus Schulten
Journal:  Faraday Discuss       Date:  2009       Impact factor: 4.008

3.  Effect of late endosomal DOBMP lipid and traditional model lipids of electrophysiology on the anthrax toxin channel activity.

Authors:  Nnanya Kalu; Yoav Atsmon-Raz; Sanaz Momben Abolfath; Laura Lucas; Clare Kenney; Stephen H Leppla; D Peter Tieleman; Ekaterina M Nestorovich
Journal:  Biochim Biophys Acta Biomembr       Date:  2018-08-23       Impact factor: 3.747

4.  Understanding ion conductance on a molecular level: an all-atom modeling of the bacterial porin OmpF.

Authors:  Soroosh Pezeshki; Catalin Chimerel; Andrey N Bessonov; Mathias Winterhalter; Ulrich Kleinekathöfer
Journal:  Biophys J       Date:  2009-10-07       Impact factor: 4.033

5.  Polymer partitioning and ion selectivity suggest asymmetrical shape for the membrane pore formed by epsilon toxin.

Authors:  Ekaterina M Nestorovich; Vladimir A Karginov; Sergey M Bezrukov
Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

6.  Scaling Behavior of Ionic Transport in Membrane Nanochannels.

Authors:  María Queralt-Martín; M Lidón López; Marcel Aguilella-Arzo; Vicente M Aguilella; Antonio Alcaraz
Journal:  Nano Lett       Date:  2018-09-10       Impact factor: 11.189

7.  Hydrophobic pulmonary surfactant proteins SP-B and SP-C induce pore formation in planar lipid membranes: evidence for proteolipid pores.

Authors:  Elisa Parra; Antonio Alcaraz; Antonio Cruz; Vicente M Aguilella; Jesús Pérez-Gil
Journal:  Biophys J       Date:  2013-01-08       Impact factor: 4.033

8.  Tuning transport properties of nanofluidic devices with local charge inversion.

Authors:  Yan He; Dirk Gillespie; Dezsö Boda; Ivan Vlassiouk; Robert S Eisenberg; Zuzanna S Siwy
Journal:  J Am Chem Soc       Date:  2009-04-15       Impact factor: 15.419

9.  Inversion of membrane surface charge by trivalent cations probed with a cation-selective channel.

Authors:  Philip A Gurnev; Sergey M Bezrukov
Journal:  Langmuir       Date:  2012-11-02       Impact factor: 3.882

10.  Role of Electroosmosis in the Permeation of Neutral Molecules: CymA and Cyclodextrin as an Example.

Authors:  Satya Prathyusha Bhamidimarri; Jigneshkumar Dahyabhai Prajapati; Bert van den Berg; Mathias Winterhalter; Ulrich Kleinekathöfer
Journal:  Biophys J       Date:  2016-02-02       Impact factor: 4.033

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