Literature DB >> 19131569

Kinetic complexity of the global response to glucocorticoid receptor action.

Sam John1, Thomas A Johnson, Myong-Hee Sung, Simon C Biddie, Saskia Trump, Christine A Koch-Paiz, Sean R Davis, Robert Walker, Paul S Meltzer, Gordon L Hager.   

Abstract

We have characterized the kinetic response of gene targets throughout the murine genome to transcriptional modulation by the glucocorticoid receptor (GR). In contrast to a model in which multiple genes are either repressed or activated during the GR response, the vast majority of responsive genes are subject to complex regulation profiles, frequently with alternate activation and repression phases. We also observe that GR binding at response elements does not always correlate with the target gene response profile. Thus, the cellular response to GR stimulation involves a highly orchestrated series of regulatory actions and not simply a binary response to hormone.

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Year:  2009        PMID: 19131569      PMCID: PMC2659280          DOI: 10.1210/en.2008-0863

Source DB:  PubMed          Journal:  Endocrinology        ISSN: 0013-7227            Impact factor:   4.736


  31 in total

1.  The glucocorticoid receptor: rapid exchange with regulatory sites in living cells.

Authors:  J G McNally; W G Müller; D Walker; R Wolford; G L Hager
Journal:  Science       Date:  2000-02-18       Impact factor: 47.728

2.  Ratio-based decisions and the quantitative analysis of cDNA microarray images.

Authors:  Y Chen; E R Dougherty; M L Bittner
Journal:  J Biomed Opt       Date:  1997-10       Impact factor: 3.170

3.  Protein-protein interactions and transcriptional antagonism between the subfamily of NGFI-B/Nur77 orphan nuclear receptors and glucocorticoid receptor.

Authors:  Christine Martens; Steve Bilodeau; Mario Maira; Yves Gauthier; Jacques Drouin
Journal:  Mol Endocrinol       Date:  2004-12-09

4.  Proteasome-mediated glucocorticoid receptor degradation restricts transcriptional signaling by glucocorticoids.

Authors:  A D Wallace; J A Cidlowski
Journal:  J Biol Chem       Date:  2001-09-12       Impact factor: 5.157

5.  Acute activation of hippocampal glucocorticoid receptors results in different waves of gene expression throughout time.

Authors:  M C Morsink; P J Steenbergen; J B Vos; H Karst; M Joëls; E R De Kloet; N A Datson
Journal:  J Neuroendocrinol       Date:  2006-04       Impact factor: 3.627

6.  Alternative effects of the ubiquitin-proteasome pathway on glucocorticoid receptor down-regulation and transactivation are mediated by CHIP, an E3 ligase.

Authors:  Xinjia Wang; Donald B DeFranco
Journal:  Mol Endocrinol       Date:  2005-03-10

7.  Reciprocal recruitment of DRIP/mediator and p160 coactivator complexes in vivo by estrogen receptor.

Authors:  Darya Burakov; Linda A Crofts; Chao-Pei Betty Chang; Leonard P Freedman
Journal:  J Biol Chem       Date:  2002-03-13       Impact factor: 5.157

Review 8.  Cross-talk between nuclear receptors and nuclear factor kappaB.

Authors:  K De Bosscher; W Vanden Berghe; G Haegeman
Journal:  Oncogene       Date:  2006-10-30       Impact factor: 9.867

9.  Interaction of the glucocorticoid receptor with the chromatin landscape.

Authors:  Sam John; Peter J Sabo; Thomas A Johnson; Myong-Hee Sung; Simon C Biddie; Stafford L Lightman; Ty C Voss; Sean R Davis; Paul S Meltzer; John A Stamatoyannopoulos; Gordon L Hager
Journal:  Mol Cell       Date:  2008-03-14       Impact factor: 17.970

10.  Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing.

Authors:  Gordon Robertson; Martin Hirst; Matthew Bainbridge; Misha Bilenky; Yongjun Zhao; Thomas Zeng; Ghia Euskirchen; Bridget Bernier; Richard Varhol; Allen Delaney; Nina Thiessen; Obi L Griffith; Ann He; Marco Marra; Michael Snyder; Steven Jones
Journal:  Nat Methods       Date:  2007-06-11       Impact factor: 28.547

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  52 in total

Review 1.  A decade of 3C technologies: insights into nuclear organization.

Authors:  Elzo de Wit; Wouter de Laat
Journal:  Genes Dev       Date:  2012-01-01       Impact factor: 11.361

2.  Hormone binding and co-regulator binding to the glucocorticoid receptor are allosterically coupled.

Authors:  Samuel J Pfaff; Robert J Fletterick
Journal:  J Biol Chem       Date:  2010-03-24       Impact factor: 5.157

3.  Class I lysine deacetylases facilitate glucocorticoid-induced transcription.

Authors:  Vineela Kadiyala; Nina M Patrick; Wana Mathieu; Rosa Jaime-Frias; Naruekamol Pookhao; Lingling An; Catharine L Smith
Journal:  J Biol Chem       Date:  2013-08-14       Impact factor: 5.157

4.  Transcriptional Bursting and Co-bursting Regulation by Steroid Hormone Release Pattern and Transcription Factor Mobility.

Authors:  Diana A Stavreva; David A Garcia; Gregory Fettweis; Prabhakar R Gudla; George F Zaki; Vikas Soni; Andrew McGowan; Geneva Williams; Anh Huynh; Murali Palangat; R Louis Schiltz; Thomas A Johnson; Diego M Presman; Matthew L Ferguson; Gianluca Pegoraro; Arpita Upadhyaya; Gordon L Hager
Journal:  Mol Cell       Date:  2019-08-14       Impact factor: 17.970

Review 5.  Genomic effects of glucocorticoids.

Authors:  Ivana Grbesa; Ofir Hakim
Journal:  Protoplasma       Date:  2016-12-24       Impact factor: 3.356

6.  Transcription factor AP1 potentiates chromatin accessibility and glucocorticoid receptor binding.

Authors:  Simon C Biddie; Sam John; Pete J Sabo; Robert E Thurman; Thomas A Johnson; R Louis Schiltz; Tina B Miranda; Myong-Hee Sung; Saskia Trump; Stafford L Lightman; Charles Vinson; John A Stamatoyannopoulos; Gordon L Hager
Journal:  Mol Cell       Date:  2011-07-08       Impact factor: 17.970

7.  Glucocorticoid treatment of astrocytes results in temporally dynamic transcriptome regulation and astrocyte-enriched mRNA changes in vitro.

Authors:  Bradley S Carter; Fan Meng; Robert C Thompson
Journal:  Physiol Genomics       Date:  2012-10-30       Impact factor: 3.107

8.  Caveolin-1 regulates genomic action of the glucocorticoid receptor in neural stem cells.

Authors:  Melanie E Peffer; Uma R Chandran; Soumya Luthra; Daniela Volonte; Ferruccio Galbiati; Michael J Garabedian; A Paula Monaghan; Donald B DeFranco
Journal:  Mol Cell Biol       Date:  2014-07       Impact factor: 4.272

Review 9.  Complex genomic interactions in the dynamic regulation of transcription by the glucocorticoid receptor.

Authors:  Tina B Miranda; Stephanie A Morris; Gordon L Hager
Journal:  Mol Cell Endocrinol       Date:  2013-03-14       Impact factor: 4.102

10.  Histone H1 phosphorylation is associated with transcription by RNA polymerases I and II.

Authors:  Yupeng Zheng; Sam John; James J Pesavento; Jennifer R Schultz-Norton; R Louis Schiltz; Sonjoon Baek; Ann M Nardulli; Gordon L Hager; Neil L Kelleher; Craig A Mizzen
Journal:  J Cell Biol       Date:  2010-05-03       Impact factor: 10.539

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