Literature DB >> 19114655

DGCR8-dependent microRNA biogenesis is essential for skin development.

Rui Yi1, H Amalia Pasolli, Markus Landthaler, Markus Hafner, Tolulope Ojo, Robert Sheridan, Chris Sander, Donal O'Carroll, Markus Stoffel, Thomas Tuschl, Elaine Fuchs.   

Abstract

MicroRNAs play important roles in animal development. Numerous conditional knockout (cKO) studies of Dicer have been performed to interrogate the functions of microRNA during mammalian development. However, because Dicer was recently implicated in the biogenesis of endogenous siRNAs in mammals, it raises the question whether the Dicer cKO defects can be attributable to the loss of microRNAs. Previously, we and others conditionally targeted Dicer and identified its critical roles in embryonic skin morphogenesis. Here, we focus explicitly on microRNAs by taking a parallel strategy with Dgcr8, encoding an essential component of the microprocessor complex that is exclusively required for microRNA biogenesis. With this comparative analysis, we show definitively that the Dicer- and Dgcr8-null skin defects are both striking and indistinguishable. By deep sequencing analysis of microRNA depletion in both Dicer- and Dgcr8-null skin, we demonstrate that most abundantly expressed skin microRNAs are dependent on both Dicer and DGCR8. Our results underscore a specific importance of microRNAs in controlling mammalian skin development.

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Year:  2008        PMID: 19114655      PMCID: PMC2626731          DOI: 10.1073/pnas.0810766105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

1.  Recognition and cleavage of primary microRNA precursors by the nuclear processing enzyme Drosha.

Authors:  Yan Zeng; Rui Yi; Bryan R Cullen
Journal:  EMBO J       Date:  2004-11-25       Impact factor: 11.598

2.  Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex.

Authors:  Jinju Han; Yoontae Lee; Kyu-Hyeon Yeom; Jin-Wu Nam; Inha Heo; Je-Keun Rhee; Sun Young Sohn; Yunje Cho; Byoung-Tak Zhang; V Narry Kim
Journal:  Cell       Date:  2006-06-02       Impact factor: 41.582

3.  DGCR8 is essential for microRNA biogenesis and silencing of embryonic stem cell self-renewal.

Authors:  Yangming Wang; Rostislav Medvid; Collin Melton; Rudolf Jaenisch; Robert Blelloch
Journal:  Nat Genet       Date:  2007-01-28       Impact factor: 38.330

4.  Intronic microRNA precursors that bypass Drosha processing.

Authors:  J Graham Ruby; Calvin H Jan; David P Bartel
Journal:  Nature       Date:  2007-06-24       Impact factor: 49.962

5.  Morphogenesis in skin is governed by discrete sets of differentially expressed microRNAs.

Authors:  Rui Yi; Dónal O'Carroll; Hilda A Pasolli; Zhihong Zhang; Fred S Dietrich; Alexander Tarakhovsky; Elaine Fuchs
Journal:  Nat Genet       Date:  2006-02-05       Impact factor: 38.330

6.  The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila.

Authors:  Katsutomo Okamura; Joshua W Hagen; Hong Duan; David M Tyler; Eric C Lai
Journal:  Cell       Date:  2007-06-28       Impact factor: 41.582

7.  Dicer-deficient mouse embryonic stem cells are defective in differentiation and centromeric silencing.

Authors:  Chryssa Kanellopoulou; Stefan A Muljo; Andrew L Kung; Shridar Ganesan; Ronny Drapkin; Thomas Jenuwein; David M Livingston; Klaus Rajewsky
Journal:  Genes Dev       Date:  2005-02-15       Impact factor: 11.361

8.  The miRNA-processing enzyme dicer is essential for the morphogenesis and maintenance of hair follicles.

Authors:  Thomas Andl; Elizabeth P Murchison; Fei Liu; Yuhang Zhang; Monica Yunta-Gonzalez; John W Tobias; Claudia D Andl; John T Seykora; Gregory J Hannon; Sarah E Millar
Journal:  Curr Biol       Date:  2006-05-11       Impact factor: 10.834

9.  A mammalian microRNA expression atlas based on small RNA library sequencing.

Authors:  Pablo Landgraf; Mirabela Rusu; Robert Sheridan; Alain Sewer; Nicola Iovino; Alexei Aravin; Sébastien Pfeffer; Amanda Rice; Alice O Kamphorst; Markus Landthaler; Carolina Lin; Nicholas D Socci; Leandro Hermida; Valerio Fulci; Sabina Chiaretti; Robin Foà; Julia Schliwka; Uta Fuchs; Astrid Novosel; Roman-Ulrich Müller; Bernhard Schermer; Ute Bissels; Jason Inman; Quang Phan; Minchen Chien; David B Weir; Ruchi Choksi; Gabriella De Vita; Daniela Frezzetti; Hans-Ingo Trompeter; Veit Hornung; Grace Teng; Gunther Hartmann; Miklos Palkovits; Roberto Di Lauro; Peter Wernet; Giuseppe Macino; Charles E Rogler; James W Nagle; Jingyue Ju; F Nina Papavasiliou; Thomas Benzing; Peter Lichter; Wayne Tam; Michael J Brownstein; Andreas Bosio; Arndt Borkhardt; James J Russo; Chris Sander; Mihaela Zavolan; Thomas Tuschl
Journal:  Cell       Date:  2007-06-29       Impact factor: 41.582

10.  Identification and classification of conserved RNA secondary structures in the human genome.

Authors:  Jakob Skou Pedersen; Gill Bejerano; Adam Siepel; Kate Rosenbloom; Kerstin Lindblad-Toh; Eric S Lander; Jim Kent; Webb Miller; David Haussler
Journal:  PLoS Comput Biol       Date:  2006-04-21       Impact factor: 4.475

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  120 in total

1.  p63-microRNA feedback in keratinocyte senescence.

Authors:  Pia Rivetti di Val Cervo; Anna Maria Lena; Milena Nicoloso; Simona Rossi; Mara Mancini; Huiqing Zhou; Gaelle Saintigny; Elena Dellambra; Teresa Odorisio; Christian Mahé; George Adrian Calin; Eleonora Candi; Gerry Melino
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-06       Impact factor: 11.205

2.  Inducible deletion of epidermal Dicer and Drosha reveals multiple functions for miRNAs in postnatal skin.

Authors:  Monica Teta; Yeon Sook Choi; Tishina Okegbe; Gabrielle Wong; Oliver H Tam; Mark M W Chong; John T Seykora; Andras Nagy; Dan R Littman; Thomas Andl; Sarah E Millar
Journal:  Development       Date:  2012-04       Impact factor: 6.868

Review 3.  General principals of miRNA biogenesis and regulation in the brain.

Authors:  Dónal O'Carroll; Anne Schaefer
Journal:  Neuropsychopharmacology       Date:  2012-06-06       Impact factor: 7.853

4.  Development and homeostasis of the skin epidermis.

Authors:  Panagiota A Sotiropoulou; Cedric Blanpain
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-07-01       Impact factor: 10.005

5.  MicroRNAs control hepatocyte proliferation during liver regeneration.

Authors:  Guisheng Song; Amar Deep Sharma; Garrett R Roll; Raymond Ng; Andrew Y Lee; Robert H Blelloch; Niels M Frandsen; Holger Willenbring
Journal:  Hepatology       Date:  2010-05       Impact factor: 17.425

Review 6.  MicroRNAs in skin and wound healing.

Authors:  Jaideep Banerjee; Yuk Cheung Chan; Chandan K Sen
Journal:  Physiol Genomics       Date:  2010-10-19       Impact factor: 3.107

7.  Ferric, not ferrous, heme activates RNA-binding protein DGCR8 for primary microRNA processing.

Authors:  Ian Barr; Aaron T Smith; Yanqiu Chen; Rachel Senturia; Judith N Burstyn; Feng Guo
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-23       Impact factor: 11.205

8.  Microprocessor complex subunit DiGeorge syndrome critical region gene 8 (Dgcr8) is required for schwann cell myelination and myelin maintenance.

Authors:  Hsin-Pin Lin; Idil Oksuz; Edward Hurley; Lawrence Wrabetz; Rajeshwar Awatramani
Journal:  J Biol Chem       Date:  2015-08-13       Impact factor: 5.157

Review 9.  MicroRNAs in normal and psoriatic skin.

Authors:  Jing Xia; Weixiong Zhang
Journal:  Physiol Genomics       Date:  2013-12-10       Impact factor: 3.107

10.  Highly efficient ligation of small RNA molecules for microRNA quantitation by high-throughput sequencing.

Authors:  Jerome E Lee; Rui Yi
Journal:  J Vis Exp       Date:  2014-11-18       Impact factor: 1.355

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