Literature DB >> 19109308

Transposon tools hopping in vertebrates.

Jun Ni1, Karl J Clark, Scott C Fahrenkrug, Stephen C Ekker.   

Abstract

In the past decade, tools derived from DNA transposons have made major contributions to vertebrate genetic studies from gene delivery to gene discovery. Multiple, highly complementary systems have been developed, and many more are in the pipeline. Judging which DNA transposon element will work the best in diverse uses from zebrafish genetic manipulation to human gene therapy is currently a complex task. We have summarized the major transposon vector systems active in vertebrates, comparing and contrasting known critical biochemical and in vivo properties, for future tool design and new genetic applications.

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Year:  2008        PMID: 19109308      PMCID: PMC2722259          DOI: 10.1093/bfgp/eln049

Source DB:  PubMed          Journal:  Brief Funct Genomic Proteomic        ISSN: 1473-9550


  88 in total

1.  Functional similarities between retroviruses and the IS3 family of bacterial insertion sequences?

Authors:  O Fayet; P Ramond; P Polard; M F Prère; M Chandler
Journal:  Mol Microbiol       Date:  1990-10       Impact factor: 3.501

2.  Molecular reconstruction of Sleeping Beauty, a Tc1-like transposon from fish, and its transposition in human cells.

Authors:  Z Ivics; P B Hackett; R H Plasterk; Z Izsvák
Journal:  Cell       Date:  1997-11-14       Impact factor: 41.582

3.  Autoregulation of mariner transposase activity by overproduction and dominant-negative complementation.

Authors:  A R Lohe; D L Hartl
Journal:  Mol Biol Evol       Date:  1996-04       Impact factor: 16.240

4.  DNA sequence of the maize transposable element Dissociation.

Authors:  H P Döring; E Tillmann; P Starlinger
Journal:  Nature       Date:  1984 Jan 12-18       Impact factor: 49.962

5.  Tol2 transposon-mediated transgenesis in Xenopus tropicalis.

Authors:  Michelle R Johnson Hamlet; Donald A Yergeau; Emin Kuliyev; Masatoshi Takeda; Masanori Taira; Koichi Kawakami; Paul E Mead
Journal:  Genesis       Date:  2006-09       Impact factor: 2.487

6.  Efficient gene delivery and gene expression in zebrafish using the Sleeping Beauty transposon.

Authors:  Ann E Davidson; Darius Balciunas; Deanna Mohn; Jennifer Shaffer; Spencer Hermanson; Sridhar Sivasubbu; M Pat Cliff; Perry B Hackett; Stephen C Ekker
Journal:  Dev Biol       Date:  2003-11-15       Impact factor: 3.582

7.  Chromosomal transposition of a Tc1/mariner-like element in mouse embryonic stem cells.

Authors:  G Luo; Z Ivics; Z Izsvák; A Bradley
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-01       Impact factor: 11.205

8.  The Himar1 mariner transposase cloned in a recombinant adenovirus vector is functional in mammalian cells.

Authors:  L Zhang; U Sankar; D J Lampe; H M Robertson; F L Graham
Journal:  Nucleic Acids Res       Date:  1998-08-15       Impact factor: 16.971

9.  S elements: a family of Tc1-like transposons in the genome of Drosophila melanogaster.

Authors:  P J Merriman; C D Grimes; J Ambroziak; D A Hackett; P Skinner; M J Simmons
Journal:  Genetics       Date:  1995-12       Impact factor: 4.562

10.  Structure-based prediction of insertion-site preferences of transposons into chromosomes.

Authors:  Aron M Geurts; Christopher S Hackett; Jason B Bell; Tracy L Bergemann; Lara S Collier; Corey M Carlson; David A Largaespada; Perry B Hackett
Journal:  Nucleic Acids Res       Date:  2006-05-22       Impact factor: 16.971

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  15 in total

1.  Comprehensive analysis of microRNA genomic loci identifies pervasive repetitive-element origins.

Authors:  Glen M Borchert; Nathaniel W Holton; Jonathan D Williams; William L Hernan; Ian P Bishop; Joel A Dembosky; James E Elste; Nathaniel S Gregoire; Jee-Ah Kim; Wesley W Koehler; Joe C Lengerich; Arianna A Medema; Marilyn A Nguyen; Geoffrey D Ower; Michelle A Rarick; Brooke N Strong; Nicholas J Tardi; Nathan M Tasker; Darren J Wozniak; Craig Gatto; Erik D Larson
Journal:  Mob Genet Elements       Date:  2011-05

2.  Endogenous transposases affect differently Sleeping Beauty and Frog Prince transposons in fish cells.

Authors:  Jose Braulio Gallardo-Gálvez; Teresa Méndez; Julia Béjar; M Carmen Alvarez
Journal:  Mar Biotechnol (NY)       Date:  2010-12-01       Impact factor: 3.619

Review 3.  Genome editing and genetic engineering in livestock for advancing agricultural and biomedical applications.

Authors:  Bhanu P Telugu; Ki-Eun Park; Chi-Hun Park
Journal:  Mamm Genome       Date:  2017-07-15       Impact factor: 2.957

4.  Structure prediction and analysis of DNA transposon and LINE retrotransposon proteins.

Authors:  György Abrusán; Yang Zhang; András Szilágyi
Journal:  J Biol Chem       Date:  2013-03-25       Impact factor: 5.157

5.  Cellular immune response against firefly luciferase after sleeping beauty-mediated gene transfer in vivo.

Authors:  Kelly M Podetz-Pedersen; Vaiva Vezys; Nikunj V Somia; Stephen J Russell; R Scott McIvor
Journal:  Hum Gene Ther       Date:  2014-09-22       Impact factor: 5.695

6.  Continuing analysis of microRNA origins: Formation from transposable element insertions and noncoding RNA mutations.

Authors:  Justin T Roberts; Elvera A Cooper; Connor J Favreau; Jacob S Howell; Lee G Lane; James E Mills; Derrick C Newman; Tabitha J Perry; Meaghan E Russell; Brittany M Wallace; Glen M Borchert
Journal:  Mob Genet Elements       Date:  2014-01-10

7.  Transpo-mAb display: Transposition-mediated B cell display and functional screening of full-length IgG antibody libraries.

Authors:  Lorenz Waldmeier; Ina Hellmann; Chantal K Gutknecht; Fabian I Wolter; Skylar C Cook; Sai T Reddy; Ulf Grawunder; Roger R Beerli
Journal:  MAbs       Date:  2016-03-17       Impact factor: 5.857

Review 8.  Decoding pluripotency: Genetic screens to interrogate the acquisition, maintenance, and exit of pluripotency.

Authors:  Qing V Li; Bess P Rosen; Danwei Huangfu
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2019-08-13

Review 9.  Zebrafish antipredatory responses: a future for translational research?

Authors:  Robert Gerlai
Journal:  Behav Brain Res       Date:  2009-10-15       Impact factor: 3.332

10.  Precise targeted integration by a chimaeric transposase zinc-finger fusion protein.

Authors:  Xiaofeng Feng; Amy L Bednarz; Sean D Colloms
Journal:  Nucleic Acids Res       Date:  2009-12-03       Impact factor: 16.971

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