Literature DB >> 19098281

Update of the LIPID MAPS comprehensive classification system for lipids.

Eoin Fahy1, Shankar Subramaniam, Robert C Murphy, Masahiro Nishijima, Christian R H Raetz, Takao Shimizu, Friedrich Spener, Gerrit van Meer, Michael J O Wakelam, Edward A Dennis.   

Abstract

In 2005, the International Lipid Classification and Nomenclature Committee under the sponsorship of the LIPID MAPS Consortium developed and established a "Comprehensive Classification System for Lipids" based on well-defined chemical and biochemical principles and using an ontology that is extensible, flexible, and scalable. This classification system, which is compatible with contemporary databasing and informatics needs, has now been accepted internationally and widely adopted. In response to considerable attention and requests from lipid researchers from around the globe and in a variety of fields, the comprehensive classification system has undergone significant revisions over the last few years to more fully represent lipid structures from a wider variety of sources and to provide additional levels of detail as necessary. The details of this classification system are reviewed and updated and are presented here, along with revisions to its suggested nomenclature and structure-drawing recommendations for lipids.

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Year:  2008        PMID: 19098281      PMCID: PMC2674711          DOI: 10.1194/jlr.R800095-JLR200

Source DB:  PubMed          Journal:  J Lipid Res        ISSN: 0022-2275            Impact factor:   5.922


  12 in total

Review 1.  Chemistry and biodiversity of the biologically active natural glycosides.

Authors:  Valery M Dembitsky
Journal:  Chem Biodivers       Date:  2004-05       Impact factor: 2.408

2.  Prenol nomenclature. Recommendations 1986. IUPAC-IUB Joint Commission on Biochemical Nomenclature (JCBN).

Authors: 
Journal:  Eur J Biochem       Date:  1987-09-01

Review 3.  A comprehensive classification system for lipids.

Authors:  Eoin Fahy; Shankar Subramaniam; H Alex Brown; Christopher K Glass; Alfred H Merrill; Robert C Murphy; Christian R H Raetz; David W Russell; Yousuke Seyama; Walter Shaw; Takao Shimizu; Friedrich Spener; Gerrit van Meer; Michael S VanNieuwenhze; Stephen H White; Joseph L Witztum; Edward A Dennis
Journal:  J Lipid Res       Date:  2005-02-16       Impact factor: 5.922

4.  Ladderane phospholipids in anammox bacteria comprise phosphocholine and phosphoethanolamine headgroups.

Authors:  Henry A Boumann; Ellen C Hopmans; Ingrid van de Leemput; Huub J M Op den Camp; Jack van de Vossenberg; Marc Strous; Mike S M Jetten; Jaap S Sinninghe Damsté; Stefan Schouten
Journal:  FEMS Microbiol Lett       Date:  2006-05       Impact factor: 2.742

5.  Semi-preparative isolation of plant sulfoquinovosyldiacylglycerols by solid phase extraction and HPLC procedures.

Authors:  H A Norman; C F Mischke; B Allen; J S Vincent
Journal:  J Lipid Res       Date:  1996-06       Impact factor: 5.922

Review 6.  Astonishing diversity of natural surfactants: 1. Glycosides of fatty acids and alcohols.

Authors:  Valery M Dembitsky
Journal:  Lipids       Date:  2004-10       Impact factor: 1.880

Review 7.  Phytosterols, phytostanols, and their conjugates in foods: structural diversity, quantitative analysis, and health-promoting uses.

Authors:  Robert A Moreau; Bruce D Whitaker; Kevin B Hicks
Journal:  Prog Lipid Res       Date:  2002-11       Impact factor: 16.195

8.  Bioinformatics for lipidomics.

Authors:  Eoin Fahy; Dawn Cotter; Robert Byrnes; Manish Sud; Andrea Maer; Joshua Li; David Nadeau; Yihua Zhau; Shankar Subramaniam
Journal:  Methods Enzymol       Date:  2007       Impact factor: 1.600

9.  The lipid maps initiative in lipidomics.

Authors:  Kara Schmelzer; Eoin Fahy; Shankar Subramaniam; Edward A Dennis
Journal:  Methods Enzymol       Date:  2007       Impact factor: 1.600

10.  LMSD: LIPID MAPS structure database.

Authors:  Manish Sud; Eoin Fahy; Dawn Cotter; Alex Brown; Edward A Dennis; Christopher K Glass; Alfred H Merrill; Robert C Murphy; Christian R H Raetz; David W Russell; Shankar Subramaniam
Journal:  Nucleic Acids Res       Date:  2006-11-10       Impact factor: 16.971

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  438 in total

1.  A mouse macrophage lipidome.

Authors:  Edward A Dennis; Raymond A Deems; Richard Harkewicz; Oswald Quehenberger; H Alex Brown; Stephen B Milne; David S Myers; Christopher K Glass; Gary Hardiman; Donna Reichart; Alfred H Merrill; M Cameron Sullards; Elaine Wang; Robert C Murphy; Christian R H Raetz; Teresa A Garrett; Ziqiang Guan; Andrea C Ryan; David W Russell; Jeffrey G McDonald; Bonne M Thompson; Walter A Shaw; Manish Sud; Yihua Zhao; Shakti Gupta; Mano R Maurya; Eoin Fahy; Shankar Subramaniam
Journal:  J Biol Chem       Date:  2010-10-05       Impact factor: 5.157

Review 2.  The human plasma lipidome.

Authors:  Oswald Quehenberger; Edward A Dennis
Journal:  N Engl J Med       Date:  2011-11-10       Impact factor: 91.245

Review 3.  Lipid Metabolism in Tumor-Associated Fibroblasts.

Authors:  Hongzhong Li; Jingyuan Wan
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

Review 4.  Biological Effects of Naturally Occurring Sphingolipids, Uncommon Variants, and Their Analogs.

Authors:  Mitchell K P Lai; Wee Siong Chew; Federico Torta; Angad Rao; Greg L Harris; Jerold Chun; Deron R Herr
Journal:  Neuromolecular Med       Date:  2016-07-08       Impact factor: 3.843

5.  Analytical challenges of shotgun lipidomics at different resolution of measurements.

Authors:  Jianing Wang; Xianlin Han
Journal:  Trends Analyt Chem       Date:  2019-10-17       Impact factor: 12.296

6.  Identification of novel lipid modifications and intermembrane dynamics in Corynebacterium glutamicum using high-resolution mass spectrometry.

Authors:  Stephan Klatt; Rajini Brammananth; Sean O'Callaghan; Konstantinos A Kouremenos; Dedreia Tull; Paul K Crellin; Ross L Coppel; Malcolm J McConville
Journal:  J Lipid Res       Date:  2018-05-03       Impact factor: 5.922

7.  Systems-Level Lipid Analysis Methodologies for Qualitative and Quantitative Investigation of Lipid Signaling Events During Wound Healing.

Authors:  Dayanjan S Wijesinghe; Charles E Chalfant
Journal:  Adv Wound Care (New Rochelle)       Date:  2013-11       Impact factor: 4.730

8.  Modeling of eicosanoid fluxes reveals functional coupling between cyclooxygenases and terminal synthases.

Authors:  Yasuyuki Kihara; Shakti Gupta; Mano R Maurya; Aaron Armando; Ishita Shah; Oswald Quehenberger; Christopher K Glass; Edward A Dennis; Shankar Subramaniam
Journal:  Biophys J       Date:  2014-02-18       Impact factor: 4.033

Review 9.  Lipidomic analysis of cerebrospinal fluid by mass spectrometry-based methods.

Authors:  Benoit Colsch; Alexandre Seyer; Samia Boudah; Christophe Junot
Journal:  J Inherit Metab Dis       Date:  2014-12-09       Impact factor: 4.982

10.  Dual-polarity SALDI FT-ICR MS imaging and Kendrick mass defect data filtering for lipid analysis.

Authors:  Wendy H Müller; Alexandre Verdin; Christopher Kune; Johann Far; Edwin De Pauw; Cedric Malherbe; Gauthier Eppe
Journal:  Anal Bioanal Chem       Date:  2020-10-30       Impact factor: 4.142

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