Literature DB >> 19088715

Amyloid formation by globular proteins under native conditions.

Fabrizio Chiti1, Christopher M Dobson.   

Abstract

The conversion of proteins from their soluble states into well-organized fibrillar aggregates is associated with a wide range of pathological conditions, including neurodegenerative diseases and systemic amyloidoses. In this review, we discuss the mechanism of aggregation of globular proteins under conditions in which they are initially folded. Although a conformational change of the native state is generally necessary to initiate aggregation, we show that a transition across the major energy barrier for unfolding is not essential and that aggregation may well be initiated from locally unfolded states that become accessible, for example, via thermal fluctuations occurring under physiological conditions. We review recent evidence on this topic and discuss its significance for understanding the onset and potential inhibition of protein aggregation in the context of diseases.

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Year:  2009        PMID: 19088715     DOI: 10.1038/nchembio.131

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  75 in total

Review 1.  Molecular dynamics simulations of biomolecules.

Authors:  Martin Karplus; J Andrew McCammon
Journal:  Nat Struct Biol       Date:  2002-09

Review 2.  Native state kinetic stabilization as a strategy to ameliorate protein misfolding diseases: a focus on the transthyretin amyloidoses.

Authors:  Steven M Johnson; R Luke Wiseman; Yoshiki Sekijima; Nora S Green; Sara L Adamski-Werner; Jeffery W Kelly
Journal:  Acc Chem Res       Date:  2005-12       Impact factor: 22.384

3.  Exploring the mechanism of formation of native-like and precursor amyloid oligomers for the native acylphosphatase from Sulfolobus solfataricus.

Authors:  Georgia Plakoutsi; Francesco Bemporad; Maria Monti; Daniela Pagnozzi; Piero Pucci; Fabrizio Chiti
Journal:  Structure       Date:  2006-06       Impact factor: 5.006

4.  Stabilization of a native protein mediated by ligand binding inhibits amyloid formation independently of the aggregation pathway.

Authors:  Gemma Soldi; Georgia Plakoutsi; Niccolo Taddei; Fabrizio Chiti
Journal:  J Med Chem       Date:  2006-10-05       Impact factor: 7.446

5.  The energy landscapes and motions of proteins.

Authors:  H Frauenfelder; S G Sligar; P G Wolynes
Journal:  Science       Date:  1991-12-13       Impact factor: 47.728

6.  Local cooperativity in the unfolding of an amyloidogenic variant of human lysozyme.

Authors:  Denis Canet; Alexander M Last; Paula Tito; Margaret Sunde; Andrew Spencer; David B Archer; Christina Redfield; Carol V Robinson; Christopher M Dobson
Journal:  Nat Struct Biol       Date:  2002-04

Review 7.  Amyloid: toward terminology clarification. Report from the Nomenclature Committee of the International Society of Amyloidosis.

Authors:  Per Westermark; Merrill D Benson; Joel N Buxbaum; Alan S Cohen; Blas Frangione; Shu-Ichi Ikeda; Colin L Masters; Giampaolo Merlini; Maria J Saraiva; Jean D Sipe
Journal:  Amyloid       Date:  2005-03       Impact factor: 7.141

8.  A native to amyloidogenic transition regulated by a backbone trigger.

Authors:  Catherine M Eakin; Andrea J Berman; Andrew D Miranker
Journal:  Nat Struct Mol Biol       Date:  2006-02-19       Impact factor: 15.369

9.  Amyloid-like filaments and water-filled nanotubes formed by SOD1 mutant proteins linked to familial ALS.

Authors:  Jennifer Stine Elam; Alexander B Taylor; Richard Strange; Svetlana Antonyuk; Peter A Doucette; Jorge A Rodriguez; S Samar Hasnain; Lawrence J Hayward; Joan Selverstone Valentine; Todd O Yeates; P John Hart
Journal:  Nat Struct Biol       Date:  2003-06

10.  The acid-mediated denaturation pathway of transthyretin yields a conformational intermediate that can self-assemble into amyloid.

Authors:  Z Lai; W Colón; J W Kelly
Journal:  Biochemistry       Date:  1996-05-21       Impact factor: 3.162

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  247 in total

1.  Atomic view of a toxic amyloid small oligomer.

Authors:  Arthur Laganowsky; Cong Liu; Michael R Sawaya; Julian P Whitelegge; Jiyong Park; Minglei Zhao; Anna Pensalfini; Angela B Soriaga; Meytal Landau; Poh K Teng; Duilio Cascio; Charles Glabe; David Eisenberg
Journal:  Science       Date:  2012-03-09       Impact factor: 47.728

2.  Probing amyloid fibril growth by two-dimensional near-ultraviolet spectroscopy.

Authors:  Jun Jiang; Shaul Mukamel
Journal:  J Phys Chem B       Date:  2011-04-25       Impact factor: 2.991

3.  The evolution of multimeric protein assemblages.

Authors:  Michael Lynch
Journal:  Mol Biol Evol       Date:  2011-12-05       Impact factor: 16.240

4.  Intrinsic disorder modulates protein self-assembly and aggregation.

Authors:  Alfonso De Simone; Craig Kitchen; Ann H Kwan; Margaret Sunde; Christopher M Dobson; Daan Frenkel
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-16       Impact factor: 11.205

5.  The impact of solubility and electrostatics on fibril formation by the H3 and H4 histones.

Authors:  Traci B Topping; Lisa M Gloss
Journal:  Protein Sci       Date:  2011-11-09       Impact factor: 6.725

6.  Monomer-monomer interactions propagate structural transitions necessary for pore formation by the cholesterol-dependent cytolysins.

Authors:  Eileen M Hotze; Elizabeth Wilson-Kubalek; Allison J Farrand; Lori Bentsen; Michael W Parker; Arthur E Johnson; Rodney K Tweten
Journal:  J Biol Chem       Date:  2012-05-29       Impact factor: 5.157

7.  Transiently populated intermediate functions as a branching point of the FF domain folding pathway.

Authors:  Dmitry M Korzhnev; Tomasz L Religa; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-30       Impact factor: 11.205

8.  Characterizing intermolecular interactions that initiate native-like protein aggregation.

Authors:  Francesco Bemporad; Alfonso De Simone; Fabrizio Chiti; Christopher M Dobson
Journal:  Biophys J       Date:  2012-06-05       Impact factor: 4.033

9.  A generic crystallization-like model that describes the kinetics of amyloid fibril formation.

Authors:  Rosa Crespo; Fernando A Rocha; Ana M Damas; Pedro M Martins
Journal:  J Biol Chem       Date:  2012-07-05       Impact factor: 5.157

Review 10.  Functions of crystallins in and out of lens: roles in elongated and post-mitotic cells.

Authors:  Christine Slingsby; Graeme J Wistow
Journal:  Prog Biophys Mol Biol       Date:  2014-02-28       Impact factor: 3.667

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