Literature DB >> 22767606

A generic crystallization-like model that describes the kinetics of amyloid fibril formation.

Rosa Crespo1, Fernando A Rocha, Ana M Damas, Pedro M Martins.   

Abstract

Associated with neurodegenerative disorders such as Alzheimer, Parkinson, or prion diseases, the conversion of soluble proteins into amyloid fibrils remains poorly understood. Extensive "in vitro" measurements of protein aggregation kinetics have been reported, but no consensus mechanism has emerged until now. This contribution aims at overcoming this gap by proposing a theoretically consistent crystallization-like model (CLM) that is able to describe the classic types of amyloid fibrillization kinetics identified in our literature survey. Amyloid conversion represented as a function of time is shown to follow different curve shapes, ranging from sigmoidal to hyperbolic, according to the relative importance of the nucleation and growth steps. Using the CLM, apparently unrelated data are deconvoluted into generic mechanistic information integrating the combined influence of seeding, nucleation, growth, and fibril breakage events. It is notable that this complex assembly of interdependent events is ultimately reduced to a mathematically simple model, whose two parameters can be determined by little more than visual inspection. The good fitting results obtained for all cases confirm the CLM as a good approximation to the generalized underlying principle governing amyloid fibrillization. A perspective is presented on possible applications of the CLM during the development of new targets for amyloid disease therapeutics.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22767606      PMCID: PMC3436372          DOI: 10.1074/jbc.M112.375345

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  62 in total

1.  Asymmetric amyloid fibril elongation: a new perspective on a symmetric world.

Authors:  Caryn L Heldt; Shuqi Zhang; Georges Belfort
Journal:  Proteins       Date:  2010-10-12

2.  Amyloid nucleation triggered by agitation of beta2-microglobulin under acidic and neutral pH conditions.

Authors:  Kenji Sasahara; Hisashi Yagi; Miyo Sakai; Hironobu Naiki; Yuji Goto
Journal:  Biochemistry       Date:  2008-01-23       Impact factor: 3.162

3.  Kinetics of insulin aggregation in aqueous solutions upon agitation in the presence of hydrophobic surfaces.

Authors:  V Sluzky; J A Tamada; A M Klibanov; R Langer
Journal:  Proc Natl Acad Sci U S A       Date:  1991-11-01       Impact factor: 11.205

4.  An analytical solution to the kinetics of breakable filament assembly.

Authors:  Tuomas P J Knowles; Christopher A Waudby; Glyn L Devlin; Samuel I A Cohen; Adriano Aguzzi; Michele Vendruscolo; Eugene M Terentjev; Mark E Welland; Christopher M Dobson
Journal:  Science       Date:  2009-12-11       Impact factor: 47.728

5.  Watching amyloid fibrils grow by time-lapse atomic force microscopy.

Authors:  C Goldsbury; J Kistler; U Aebi; T Arvinte; G J Cooper
Journal:  J Mol Biol       Date:  1999-01-08       Impact factor: 5.469

6.  Common core structure of amyloid fibrils by synchrotron X-ray diffraction.

Authors:  M Sunde; L C Serpell; M Bartlam; P E Fraser; M B Pepys; C C Blake
Journal:  J Mol Biol       Date:  1997-10-31       Impact factor: 5.469

7.  Pre-steady-state kinetic analysis of the elongation of amyloid fibrils of beta(2)-microglobulin with tryptophan mutagenesis.

Authors:  Eri Chatani; Reina Ohnishi; Tsuyoshi Konuma; Kazumasa Sakurai; Hironobu Naiki; Yuji Goto
Journal:  J Mol Biol       Date:  2010-06-08       Impact factor: 5.469

8.  Conformational transitions and fibrillation mechanism of human calcitonin as studied by high-resolution solid-state 13C NMR.

Authors:  M Kamihira; A Naito; S Tuzi; A Y Nosaka; H Saitô
Journal:  Protein Sci       Date:  2000-05       Impact factor: 6.725

9.  Direct observation of amyloid growth monitored by total internal reflection fluorescence microscopy.

Authors:  Tadato Ban; Yuji Goto
Journal:  Methods Enzymol       Date:  2006       Impact factor: 1.600

10.  Kinetic modeling and determination of reaction constants of Alzheimer's beta-amyloid fibril extension and dissociation using surface plasmon resonance.

Authors:  Kazuhiro Hasegawa; Kenjiro Ono; Masahito Yamada; Hironobu Naiki
Journal:  Biochemistry       Date:  2002-11-19       Impact factor: 3.162

View more
  20 in total

1.  What Can the Kinetics of Amyloid Fibril Formation Tell about Off-pathway Aggregation?

Authors:  Rosa Crespo; Eva Villar-Alvarez; Pablo Taboada; Fernando A Rocha; Ana M Damas; Pedro M Martins
Journal:  J Biol Chem       Date:  2015-11-24       Impact factor: 5.157

2.  Inferring Mechanistic Parameters from Amyloid Formation Kinetics by Approximate Bayesian Computation.

Authors:  Eri Nakatani-Webster; Abhinav Nath
Journal:  Biophys J       Date:  2017-03-14       Impact factor: 4.033

3.  True and apparent inhibition of amyloid fibril formation.

Authors:  Pedro M Martins
Journal:  Prion       Date:  2012-12-11       Impact factor: 3.931

Review 4.  Insights into the Molecular Mechanisms of Alzheimer's and Parkinson's Diseases with Molecular Simulations: Understanding the Roles of Artificial and Pathological Missense Mutations in Intrinsically Disordered Proteins Related to Pathology.

Authors:  Orkid Coskuner-Weber; Vladimir N Uversky
Journal:  Int J Mol Sci       Date:  2018-01-24       Impact factor: 5.923

5.  Mercury(II) binds to both of chymotrypsin's histidines, causing inhibition followed by irreversible denaturation/aggregation.

Authors:  Amanda Stratton; Matthew Ericksen; Travis V Harris; Nick Symmonds; Todd P Silverstein
Journal:  Protein Sci       Date:  2017-01-14       Impact factor: 6.725

Review 6.  Recent progress on understanding the mechanisms of amyloid nucleation.

Authors:  Eri Chatani; Naoki Yamamoto
Journal:  Biophys Rev       Date:  2017-12-06

7.  Dual role of an N-terminal amyloidogenic mutation in apolipoprotein A-I: destabilization of helix bundle and enhancement of fibril formation.

Authors:  Emi Adachi; Hiroyuki Nakajima; Chiharu Mizuguchi; Padmaja Dhanasekaran; Hiroyuki Kawashima; Kohjiro Nagao; Kenichi Akaji; Sissel Lund-Katz; Michael C Phillips; Hiroyuki Saito
Journal:  J Biol Chem       Date:  2012-12-11       Impact factor: 5.157

8.  Fibril Surface-Dependent Amyloid Precursors Revealed by Coarse-Grained Molecular Dynamics Simulation.

Authors:  Yuan-Wei Ma; Tong-You Lin; Min-Yeh Tsai
Journal:  Front Mol Biosci       Date:  2021-08-06

9.  Conformational-Sensitive Fast Photochemical Oxidation of Proteins and Mass Spectrometry Characterize Amyloid Beta 1-42 Aggregation.

Authors:  Ke Sherry Li; Don L Rempel; Michael L Gross
Journal:  J Am Chem Soc       Date:  2016-09-12       Impact factor: 15.419

10.  Modeling of chemical inhibition from amyloid protein aggregation kinetics.

Authors:  José Antonio Vázquez
Journal:  BMC Pharmacol Toxicol       Date:  2014-02-27       Impact factor: 2.483

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.