Literature DB >> 19081937

Chemical approach toward efficient DNA methylation analysis.

Akimitsu Okamoto1.   

Abstract

The development of a reaction for the detection of the presence/absence of one methyl group in a very long DNA strand is a chemically and biologically challenging research subject. Several newly designed chemical assays for the typing of DNA methylation are reported and discussed in this paper. A new concept of sequence-specific short-term methylation analysis, supported by a chemical basis, is the starting point for a novel methylation-typing assay, which will supersede conventional methods.

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Year:  2008        PMID: 19081937     DOI: 10.1039/b813595a

Source DB:  PubMed          Journal:  Org Biomol Chem        ISSN: 1477-0520            Impact factor:   3.876


  11 in total

Review 1.  Interindividual variation in epigenomic phenomena in humans.

Authors:  Hugh J French; Rosalind Attenborough; Kristine Hardy; M Frances Shannon; Rohan B H Williams
Journal:  Mamm Genome       Date:  2009-09-18       Impact factor: 2.957

Review 2.  Chemistry of nucleic acids: impacts in multiple fields.

Authors:  Omid Khakshoor; Eric T Kool
Journal:  Chem Commun (Camb)       Date:  2011-04-11       Impact factor: 6.222

3.  Sensitive digital quantification of DNA methylation in clinical samples.

Authors:  Meng Li; Wei-Dong Chen; Nickolas Papadopoulos; Steven N Goodman; Niels Christian Bjerregaard; Søren Laurberg; Bernard Levin; Hartmut Juhl; Nadir Arber; Helen Moinova; Kris Durkee; Kerstin Schmidt; Yiping He; Frank Diehl; Victor E Velculescu; Shibin Zhou; Luis A Diaz; Kenneth W Kinzler; Sanford D Markowitz; Bert Vogelstein
Journal:  Nat Biotechnol       Date:  2009-08-16       Impact factor: 54.908

4.  Engineering affinity agents for the detection of hemi-methylated CpG sites in DNA.

Authors:  B E Tarn; K-J Sung; H D Sikes
Journal:  Mol Syst Des Eng       Date:  2016-09-07

5.  Nanorod-Shaped Basic Al2O3 Catalyzed N,N-Diformylation of Bisuracil Derivatives: A Greener "NOSE" Approach.

Authors:  Vijay K Das; Ashim J Thakur
Journal:  ISRN Org Chem       Date:  2013-06-26

6.  Chemical discrimination between dC and 5MedC via their hydroxylamine adducts.

Authors:  Martin Münzel; Lukas Lercher; Markus Müller; Thomas Carell
Journal:  Nucleic Acids Res       Date:  2010-09-02       Impact factor: 16.971

7.  Use of specific chemical reagents for detection of modified nucleotides in RNA.

Authors:  Isabelle Behm-Ansmant; Mark Helm; Yuri Motorin
Journal:  J Nucleic Acids       Date:  2011-04-13

8.  On-chip DNA methylation analysis using osmium complexation.

Authors:  Kaori Sugizaki; Tadashi Umemoto; Akimitsu Okamoto
Journal:  J Nucleic Acids       Date:  2011-05-15

Review 9.  5-methylcytosine in RNA: detection, enzymatic formation and biological functions.

Authors:  Yuri Motorin; Frank Lyko; Mark Helm
Journal:  Nucleic Acids Res       Date:  2009-12-08       Impact factor: 16.971

10.  Quick, Selective and Reversible Photocrosslinking Reaction between 5-Methylcytosine and 3-Cyanovinylcarbazole in DNA Double Strand.

Authors:  Kenzo Fujimo; Kaoru Konishi-Hiratsuka; Takashi Sakamoto
Journal:  Int J Mol Sci       Date:  2013-03-12       Impact factor: 5.923

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