Literature DB >> 19763687

Interindividual variation in epigenomic phenomena in humans.

Hugh J French1, Rosalind Attenborough, Kristine Hardy, M Frances Shannon, Rohan B H Williams.   

Abstract

Our knowledge of regulatory mechanisms of gene expression and other chromosomal processes related to DNA methylation and chromatin state is continuing to grow at a rapid pace. Understanding how these epigenomic phenomena vary between individuals will have an impact on understanding their broader role in determining variation in gene expression and biochemical, physiological, and behavioural phenotypes. In this review we survey recent progress in this area, focusing on data available from humans. We highlight the role of obligatory (sequence-dependent) epigenomic variation as an important mechanism for generating interindividual variation that could impact our understanding of the mechanistic basis of complex trait architecture.

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Year:  2009        PMID: 19763687     DOI: 10.1007/s00335-009-9219-0

Source DB:  PubMed          Journal:  Mamm Genome        ISSN: 0938-8990            Impact factor:   2.957


  73 in total

Review 1.  Phylogenomics of the nucleosome.

Authors:  Harmit S Malik; Steven Henikoff
Journal:  Nat Struct Biol       Date:  2003-11

2.  High-throughput mapping of the chromatin structure of human promoters.

Authors:  Fatih Ozsolak; Jun S Song; X Shirley Liu; David E Fisher
Journal:  Nat Biotechnol       Date:  2007-01-14       Impact factor: 54.908

Review 3.  Computational epigenetics.

Authors:  Christoph Bock; Thomas Lengauer
Journal:  Bioinformatics       Date:  2007-11-17       Impact factor: 6.937

Review 4.  Chromatin proteomics and epigenetic regulatory circuits.

Authors:  Clemens Bönisch; Sonja M Nieratschker; Nikos K Orfanos; Sandra B Hake
Journal:  Expert Rev Proteomics       Date:  2008-02       Impact factor: 3.940

5.  Combinatorial patterns of histone acetylations and methylations in the human genome.

Authors:  Zhibin Wang; Chongzhi Zang; Jeffrey A Rosenfeld; Dustin E Schones; Artem Barski; Suresh Cuddapah; Kairong Cui; Tae-Young Roh; Weiqun Peng; Michael Q Zhang; Keji Zhao
Journal:  Nat Genet       Date:  2008-06-15       Impact factor: 38.330

6.  Maternal epigenetics and methyl supplements affect agouti gene expression in Avy/a mice.

Authors:  G L Wolff; R L Kodell; S R Moore; C A Cooney
Journal:  FASEB J       Date:  1998-08       Impact factor: 5.191

7.  Intra- and interindividual epigenetic variation in human germ cells.

Authors:  James M Flanagan; Violeta Popendikyte; Natalija Pozdniakovaite; Martha Sobolev; Abbas Assadzadeh; Axel Schumacher; Masood Zangeneh; Lynette Lau; Carl Virtanen; Sun-Chong Wang; Arturas Petronis
Journal:  Am J Hum Genet       Date:  2006-05-25       Impact factor: 11.025

8.  Planning the human variome project: the Spain report.

Authors:  Jim Kaput; Richard G H Cotton; Lauren Hardman; Michael Watson; Aida I Al Aqeel; Jumana Y Al-Aama; Fahd Al-Mulla; Santos Alonso; Stefan Aretz; Arleen D Auerbach; Bharati Bapat; Inge T Bernstein; Jong Bhak; Stacey L Bleoo; Helmut Blöcker; Steven E Brenner; John Burn; Mariona Bustamante; Rita Calzone; Anne Cambon-Thomsen; Michele Cargill; Paola Carrera; Lawrence Cavedon; Yoon Shin Cho; Yeun-Jun Chung; Mireille Claustres; Garry Cutting; Raymond Dalgleish; Johan T den Dunnen; Carlos Díaz; Steven Dobrowolski; M Rosário N dos Santos; Rosemary Ekong; Simon B Flanagan; Paul Flicek; Yoichi Furukawa; Maurizio Genuardi; Ho Ghang; Maria V Golubenko; Marc S Greenblatt; Ada Hamosh; John M Hancock; Ross Hardison; Terence M Harrison; Robert Hoffmann; Rania Horaitis; Heather J Howard; Carol Isaacson Barash; Neskuts Izagirre; Jongsun Jung; Toshio Kojima; Sandrine Laradi; Yeon-Su Lee; Jong-Young Lee; Vera L Gil-da-Silva-Lopes; Finlay A Macrae; Donna Maglott; Makia J Marafie; Steven G E Marsh; Yoichi Matsubara; Ludwine M Messiaen; Gabriela Möslein; Mihai G Netea; Melissa L Norton; Peter J Oefner; William S Oetting; James C O'Leary; Ana Maria Oller de Ramirez; Mark H Paalman; Jillian Parboosingh; George P Patrinos; Giuditta Perozzi; Ian R Phillips; Sue Povey; Suyash Prasad; Ming Qi; David J Quin; Rajkumar S Ramesar; C Sue Richards; Judith Savige; Dagmar G Scheible; Rodney J Scott; Daniela Seminara; Elizabeth A Shephard; Rolf H Sijmons; Timothy D Smith; María-Jesús Sobrido; Toshihiro Tanaka; Sean V Tavtigian; Graham R Taylor; Jon Teague; Thoralf Töpel; Mollie Ullman-Cullere; Joji Utsunomiya; Henk J van Kranen; Mauno Vihinen; Elizabeth Webb; Thomas K Weber; Meredith Yeager; Young I Yeom; Seon-Hee Yim; Hyang-Sook Yoo
Journal:  Hum Mutat       Date:  2009-04       Impact factor: 4.878

9.  Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells.

Authors:  Madeleine P Ball; Jin Billy Li; Yuan Gao; Je-Hyuk Lee; Emily M LeProust; In-Hyun Park; Bin Xie; George Q Daley; George M Church
Journal:  Nat Biotechnol       Date:  2009-03-29       Impact factor: 54.908

10.  DNA methylation profiling of human chromosomes 6, 20 and 22.

Authors:  Florian Eckhardt; Joern Lewin; Rene Cortese; Vardhman K Rakyan; John Attwood; Matthias Burger; John Burton; Tony V Cox; Rob Davies; Thomas A Down; Carolina Haefliger; Roger Horton; Kevin Howe; David K Jackson; Jan Kunde; Christoph Koenig; Jennifer Liddle; David Niblett; Thomas Otto; Roger Pettett; Stefanie Seemann; Christian Thompson; Tony West; Jane Rogers; Alex Olek; Kurt Berlin; Stephan Beck
Journal:  Nat Genet       Date:  2006-10-29       Impact factor: 38.330

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  2 in total

Review 1.  Epigenetic epidemiology of common complex disease: prospects for prediction, prevention, and treatment.

Authors:  Caroline L Relton; George Davey Smith
Journal:  PLoS Med       Date:  2010-10-26       Impact factor: 11.069

2.  Using a medium-throughput comet assay to evaluate the global DNA methylation status of single cells.

Authors:  Angélique Lewies; Etresia Van Dyk; Johannes F Wentzel; Pieter J Pretorius
Journal:  Front Genet       Date:  2014-07-07       Impact factor: 4.599

  2 in total

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