Literature DB >> 19061340

Formation and function of the Manganese(IV)/Iron(III) cofactor in Chlamydia trachomatis ribonucleotide reductase.

Wei Jiang1, Danny Yun, Lana Saleh, J Martin Bollinger, Carsten Krebs.   

Abstract

The beta(2) subunit of a class Ia or Ib ribonucleotide reductase (RNR) is activated when its carboxylate-bridged Fe(2)(II/II) cluster reacts with O(2) to oxidize a nearby tyrosine (Y) residue to a stable radical (Y(*)). During turnover, the Y(*) in beta(2) is thought to reversibly oxidize a cysteine (C) in the alpha(2) subunit to a thiyl radical (C(*)) by a long-distance ( approximately 35 A) proton-coupled electron-transfer (PCET) step. The C(*) in alpha(2) then initiates reduction of the 2' position of the ribonucleoside 5'-diphosphate substrate by abstracting the hydrogen atom from C3'. The class I RNR from Chlamydia trachomatis (Ct) is the prototype of a newly recognized subclass (Ic), which is characterized by the presence of a phenylalanine (F) residue at the site of beta(2) where the essential radical-harboring Y is normally found. We recently demonstrated that Ct RNR employs a heterobinuclear Mn(IV)/Fe(III) cluster for radical initiation. In essence, the Mn(IV) ion of the cluster functionally replaces the Y(*) of the conventional class I RNR. The Ct beta(2) protein also autoactivates by reaction of its reduced (Mn(II)/Fe(II)) metal cluster with O(2). In this reaction, an unprecedented Mn(IV)/Fe(IV) intermediate accumulates almost stoichiometrically and decays by one-electron reduction of the Fe(IV) site. This reduction is mediated by the near-surface residue, Y222, a residue with no functional counterpart in the well-studied conventional class I RNRs. In this review, we recount the discovery of the novel Mn/Fe redox cofactor in Ct RNR and summarize our current understanding of how it assembles and initiates nucleotide reduction.

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Year:  2008        PMID: 19061340      PMCID: PMC2693138          DOI: 10.1021/bi8017625

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  55 in total

1.  Ribonucleotide reductase of Brevibacterium ammoniagenes is a manganese enzyme.

Authors:  A Willing; H Follmann; G Auling
Journal:  Eur J Biochem       Date:  1988-01-04

2.  (Mu-1,2-peroxo)diiron(III/III) complex as a precursor to the diiron(III/IV) intermediate X in the assembly of the iron-radical cofactor of ribonucleotide reductase from mouse.

Authors:  Danny Yun; Ricardo García-Serres; Brandon M Chicalese; Young H An; Boi Hanh Huynh; J Martin Bollinger
Journal:  Biochemistry       Date:  2007-01-27       Impact factor: 3.162

3.  Three-dimensional structure of the free radical protein of ribonucleotide reductase.

Authors:  P Nordlund; B M Sjöberg; H Eklund
Journal:  Nature       Date:  1990-06-14       Impact factor: 49.962

4.  Evidence by mutagenesis that Tyr(370) of the mouse ribonucleotide reductase R2 protein is the connecting link in the intersubunit radical transfer pathway.

Authors:  U Rova; A Adrait; S Pötsch; A Gräslund; L Thelander
Journal:  J Biol Chem       Date:  1999-08-20       Impact factor: 5.157

5.  Two conserved tyrosine residues in protein R1 participate in an intermolecular electron transfer in ribonucleotide reductase.

Authors:  M Ekberg; M Sahlin; M Eriksson; B M Sjöberg
Journal:  J Biol Chem       Date:  1996-08-23       Impact factor: 5.157

6.  Structure of the nitrogen-centered radical formed during inactivation of E. coli ribonucleotide reductase by 2'-azido-2'-deoxyuridine-5'-diphosphate: trapping of the 3'-ketonucleotide.

Authors:  Jörg Fritscher; Erin Artin; Stanislaw Wnuk; Galit Bar; John H Robblee; Sylwia Kacprzak; Martin Kaupp; Robert G Griffin; Marina Bennati; JoAnne Stubbe
Journal:  J Am Chem Soc       Date:  2005-06-01       Impact factor: 15.419

7.  Use of a chemical trigger for electron transfer to characterize a precursor to cluster X in assembly of the iron-radical cofactor of Escherichia coli ribonucleotide reductase.

Authors:  Lana Saleh; Carsten Krebs; Brenda A Ley; Sunail Naik; Boi Hanh Huynh; J Martin Bollinger
Journal:  Biochemistry       Date:  2004-05-25       Impact factor: 3.162

8.  YfaE, a ferredoxin involved in diferric-tyrosyl radical maintenance in Escherichia coli ribonucleotide reductase.

Authors:  Chia-Hung Wu; Wei Jiang; Carsten Krebs; JoAnne Stubbe
Journal:  Biochemistry       Date:  2007-09-20       Impact factor: 3.162

9.  The iron center in ribonucleotide reductase from Escherichia coli.

Authors:  L Petersson; A Gräslund; A Ehrenberg; B M Sjöberg; P Reichard
Journal:  J Biol Chem       Date:  1980-07-25       Impact factor: 5.157

10.  Spectroscopic and electronic structure studies of intermediate X in ribonucleotide reductase R2 and two variants: a description of the FeIV-oxo bond in the FeIII-O-FeIV dimer.

Authors:  Natasa Mitić; Michael D Clay; Lana Saleh; J Martin Bollinger; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2007-06-29       Impact factor: 15.419

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  31 in total

1.  Mössbauer properties of the diferric cluster and the differential iron(II)-binding affinity of the iron sites in protein R2 of class Ia Escherichia coli ribonucleotide reductase: a DFT/electrostatics study.

Authors:  Wen-Ge Han; Gregory M Sandala; Debra Ann Giammona; Donald Bashford; Louis Noodleman
Journal:  Dalton Trans       Date:  2011-08-12       Impact factor: 4.390

2.  EXAFS simulation refinement based on broken-symmetry DFT geometries for the Mn(IV)-Fe(III) center of class I RNR from Chlamydia trachomatis.

Authors:  Sandra Luber; Sophie Leung; Carmen Herrmann; Wenge Han Du; Louis Noodleman; Victor S Batista
Journal:  Dalton Trans       Date:  2014-01-14       Impact factor: 4.390

3.  Two-Color Valence-to-Core X-ray Emission Spectroscopy Tracks Cofactor Protonation State in a Class I Ribonucleotide Reductase.

Authors:  Ryan J Martinie; Elizabeth J Blaesi; J Martin Bollinger; Carsten Krebs; Kenneth D Finkelstein; Christopher J Pollock
Journal:  Angew Chem Int Ed Engl       Date:  2018-09-04       Impact factor: 15.336

Review 4.  Metallation and mismetallation of iron and manganese proteins in vitro and in vivo: the class I ribonucleotide reductases as a case study.

Authors:  Joseph A Cotruvo; Joanne Stubbe
Journal:  Metallomics       Date:  2012-09-18       Impact factor: 4.526

5.  Oxygen-independent decarbonylation of aldehydes by cyanobacterial aldehyde decarbonylase: a new reaction of diiron enzymes.

Authors:  Debasis Das; Bekir E Eser; Jaehong Han; Aaron Sciore; E Neil G Marsh
Journal:  Angew Chem Int Ed Engl       Date:  2011-06-10       Impact factor: 15.336

6.  Oxoiron(IV) complexes as synthons for the assembly of heterobimetallic centers such as the Fe/Mn active site of Class Ic ribonucleotide reductases.

Authors:  Ang Zhou; Patrick M Crossland; Apparao Draksharapu; Andrew J Jasniewski; Scott T Kleespies; Lawrence Que
Journal:  J Biol Inorg Chem       Date:  2017-12-07       Impact factor: 3.358

Review 7.  Assembly of nonheme Mn/Fe active sites in heterodinuclear metalloproteins.

Authors:  Julia J Griese; Vivek Srinivas; Martin Högbom
Journal:  J Biol Inorg Chem       Date:  2014-04-26       Impact factor: 3.358

8.  Electron hopping through proteins.

Authors:  Jeffrey J Warren; Maraia E Ener; Antonín Vlček; Jay R Winkler; Harry B Gray
Journal:  Coord Chem Rev       Date:  2012-04-05       Impact factor: 22.315

9.  Radical-translocation intermediates and hurdling of pathway defects in "super-oxidized" (Mn(IV)/Fe(IV)) Chlamydia trachomatis ribonucleotide reductase.

Authors:  Laura M K Dassama; Wei Jiang; Paul T Varano; Maria-Eirini Pandelia; Denise A Conner; Jiajia Xie; J Martin Bollinger; Carsten Krebs
Journal:  J Am Chem Soc       Date:  2012-12-04       Impact factor: 15.419

10.  DFT calculations of comparative energetics and ENDOR/Mössbauer properties for two protonation states of the iron dimer cluster of ribonucleotide reductase intermediate X.

Authors:  Wen-Ge Han; Louis Noodleman
Journal:  Dalton Trans       Date:  2009-06-23       Impact factor: 4.390

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