Literature DB >> 19052240

Enhancing nuclear receptor-induced transcription requires nuclear motor and LSD1-dependent gene networking in interchromatin granules.

Qidong Hu1, Young-Soo Kwon, Esperanza Nunez, Maria Dafne Cardamone, Kasey R Hutt, Kenneth A Ohgi, Ivan Garcia-Bassets, David W Rose, Christopher K Glass, Michael G Rosenfeld, Xiang-Dong Fu.   

Abstract

Although the role of liganded nuclear receptors in mediating coactivator/corepressor exchange is well-established, little is known about the potential regulation of chromosomal organization in the 3-dimensional space of the nucleus in achieving integrated transcriptional responses to diverse signaling events. Here, we report that ligand induces rapid interchromosomal interactions among specific subsets of estrogen receptor alpha-bound transcription units, with a dramatic reorganization of nuclear territories, which depends on the actions of nuclear actin/myosin-I machinery and dynein light chain 1. The histone lysine demethylase, LSD1, is required for these ligand-induced interactive loci to associate with distinct interchromatin granules, long thought to serve as "storage" sites for the splicing machinery, some critical transcription elongation factors, and various chromatin remodeling complexes. We demonstrate that this 2-step nuclear rearrangement is essential for achieving enhanced, coordinated transcription of nuclear receptor target genes.

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Year:  2008        PMID: 19052240      PMCID: PMC2593616          DOI: 10.1073/pnas.0810634105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  52 in total

Review 1.  Nuclear speckles: a model for nuclear organelles.

Authors:  Angus I Lamond; David L Spector
Journal:  Nat Rev Mol Cell Biol       Date:  2003-08       Impact factor: 94.444

Review 2.  Actin up in the nucleus.

Authors:  Blaine T Bettinger; David M Gilbert; David C Amberg
Journal:  Nat Rev Mol Cell Biol       Date:  2004-05       Impact factor: 94.444

3.  Proteomic analysis of interchromatin granule clusters.

Authors:  Noriko Saitoh; Chris S Spahr; Scott D Patterson; Paula Bubulya; Andrew F Neuwald; David L Spector
Journal:  Mol Biol Cell       Date:  2004-05-28       Impact factor: 4.138

4.  Factor required for mammalian spliceosome assembly is localized to discrete regions in the nucleus.

Authors:  X D Fu; T Maniatis
Journal:  Nature       Date:  1990-02-01       Impact factor: 49.962

Review 5.  Macromolecular domains within the cell nucleus.

Authors:  D L Spector
Journal:  Annu Rev Cell Biol       Date:  1993

6.  Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parent-specific chromatin loops.

Authors:  Adele Murrell; Sarah Heeson; Wolf Reik
Journal:  Nat Genet       Date:  2004-07-25       Impact factor: 38.330

7.  Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription.

Authors:  Séverine Chambeyron; Wendy A Bickmore
Journal:  Genes Dev       Date:  2004-05-15       Impact factor: 11.361

8.  Mutations in the motor domain modulate myosin activity and myofibril organization.

Authors:  Qun Wang; Carole L Moncman; Donald A Winkelmann
Journal:  J Cell Sci       Date:  2003-09-02       Impact factor: 5.285

9.  Active genes dynamically colocalize to shared sites of ongoing transcription.

Authors:  Cameron S Osborne; Lyubomira Chakalova; Karen E Brown; David Carter; Alice Horton; Emmanuel Debrand; Beatriz Goyenechea; Jennifer A Mitchell; Susana Lopes; Wolf Reik; Peter Fraser
Journal:  Nat Genet       Date:  2004-09-07       Impact factor: 38.330

10.  Transcription-dependent spatial arrangements of CFTR and adjacent genes in human cell nuclei.

Authors:  Daniele Zink; Margarida D Amaral; Andreas Englmann; Susanne Lang; Luka A Clarke; Carsten Rudolph; Felix Alt; Kathrin Luther; Carla Braz; Nicolas Sadoni; Joseph Rosenecker; Dirk Schindelhauer
Journal:  J Cell Biol       Date:  2004-09-13       Impact factor: 10.539

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  136 in total

Review 1.  Enhancer and promoter interactions-long distance calls.

Authors:  Ivan Krivega; Ann Dean
Journal:  Curr Opin Genet Dev       Date:  2011-12-12       Impact factor: 5.578

2.  Specific positioning of the casein gene cluster in active nuclear domains in luminal mammary epithelial cells.

Authors:  Clémence Kress; Kiên Kiêu; Stéphanie Droineau; Laurent Galio; Eve Devinoy
Journal:  Chromosome Res       Date:  2011-10-27       Impact factor: 5.239

Review 3.  Nuclear actin and myosins: life without filaments.

Authors:  Primal de Lanerolle; Leonid Serebryannyy
Journal:  Nat Cell Biol       Date:  2011-11-02       Impact factor: 28.824

4.  Nuclear actin: A key player in extracellular matrix-nucleus communication.

Authors:  Virginia A Spencer
Journal:  Commun Integr Biol       Date:  2011-09-01

5.  Active maintenance of nuclear actin by importin 9 supports transcription.

Authors:  Joseph Dopie; Kari-Pekka Skarp; Eeva Kaisa Rajakylä; Kimmo Tanhuanpää; Maria K Vartiainen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-09       Impact factor: 11.205

Review 6.  Organization of transcription.

Authors:  Lyubomira Chakalova; Peter Fraser
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-07-28       Impact factor: 10.005

7.  Endothelial cell differentiation is encompassed by changes in long range interactions between inactive chromatin regions.

Authors:  Henri Niskanen; Irina Tuszynska; Rafal Zaborowski; Merja Heinäniemi; Seppo Ylä-Herttuala; Bartek Wilczynski; Minna U Kaikkonen
Journal:  Nucleic Acids Res       Date:  2018-02-28       Impact factor: 16.971

Review 8.  Developmental roles of the histone lysine demethylases.

Authors:  Amanda Nottke; Mónica P Colaiácovo; Yang Shi
Journal:  Development       Date:  2009-03       Impact factor: 6.868

9.  The lysine specific demethylase-1 (LSD1/KDM1A) regulates VEGF-A expression in prostate cancer.

Authors:  Vasundhra Kashyap; Shafqat Ahmad; Emeli M Nilsson; Leszek Helczynski; Sinéad Kenna; Jenny Liao Persson; Lorraine J Gudas; Nigel P Mongan
Journal:  Mol Oncol       Date:  2013-01-19       Impact factor: 6.603

10.  BRG1-mediated immune tolerance: facilitation of Treg activation and partial independence of chromatin remodelling.

Authors:  Barbara H Chaiyachati; Anant Jani; Yisong Wan; Haichang Huang; Richard Flavell; Tian Chi
Journal:  EMBO J       Date:  2013-01-15       Impact factor: 11.598

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