Literature DB >> 19045168

Molecular mechanism of pressure denaturation of proteins.

Yuichi Harano1, Takashi Yoshidome, Masahiro Kinoshita.   

Abstract

We investigate the molecular mechanism of pressure denaturation of proteins using the angle-dependent integral equation theory combined with the multipole water model and the morphometric approach. We argue that the hydration entropy of a protein is the key quantity. It is verified that at an elevated pressure, a swelling structure--which has only moderately less compact than the native structure but has a much larger water-accessible surface area--turns more stable than the native structure in terms of the water entropy. The swelling structure is characterized by the penetration of water into the interior. The hydration entropy is decomposed into contributions from the translational and rotational restrictions for the molecular motions of water. Each contribution is further decomposed into the water-protein pair correlation component and the water-water-protein triplet and higher-order correlation components. The pair correlation component in the translational contribution is divided into two terms arising from the excluded volume and the water structure near the protein, respectively. It is found that pressure denaturation accompanies a loss of the translational and rotational entropies at the pair correlation level but a much larger gain of the translational entropy at the triplet and higher-order correlation levels. Although the translational and rotational motions of water molecules penetrating the protein interior and contacting the protein surface are constrained, the translational restriction for the water molecules well outside the protein is greatly reduced. The latter entropic gain dominates, leading to the denaturation.

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Year:  2008        PMID: 19045168     DOI: 10.1063/1.2991176

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  8 in total

1.  Statistical Thermodynamics for Actin-Myosin Binding: The Crucial Importance of Hydration Effects.

Authors:  Hiraku Oshima; Tomohiko Hayashi; Masahiro Kinoshita
Journal:  Biophys J       Date:  2016-06-07       Impact factor: 4.033

Review 2.  Stability of protein pharmaceuticals: an update.

Authors:  Mark Cornell Manning; Danny K Chou; Brian M Murphy; Robert W Payne; Derrick S Katayama
Journal:  Pharm Res       Date:  2010-02-09       Impact factor: 4.200

Review 3.  A new theoretical approach to biological self-assembly.

Authors:  Masahiro Kinoshita
Journal:  Biophys Rev       Date:  2013-02-01

4.  Reconstituting botulinum toxin drugs: shaking, stirring or what?

Authors:  Dirk Dressler; Hans Bigalke
Journal:  J Neural Transm (Vienna)       Date:  2016-04-21       Impact factor: 3.575

5.  Binding of an RNA aptamer and a partial peptide of a prion protein: crucial importance of water entropy in molecular recognition.

Authors:  Tomohiko Hayashi; Hiraku Oshima; Tsukasa Mashima; Takashi Nagata; Masato Katahira; Masahiro Kinoshita
Journal:  Nucleic Acids Res       Date:  2014-05-06       Impact factor: 16.971

6.  Structural implications of hydrogen-bond energetics in membrane proteins revealed by high-pressure spectroscopy.

Authors:  Arvi Freiberg; Liina Kangur; John D Olsen; C Neil Hunter
Journal:  Biophys J       Date:  2012-12-05       Impact factor: 4.033

Review 7.  Importance of translational entropy of water in biological self-assembly processes like protein folding.

Authors:  Masahiro Kinoshita
Journal:  Int J Mol Sci       Date:  2009-03-11       Impact factor: 6.208

8.  Physicochemical origin of high correlation between thermal stability of a protein and its packing efficiency: a theoretical study for staphylococcal nuclease mutants.

Authors:  Koji Oda; Masahiro Kinoshita
Journal:  Biophys Physicobiol       Date:  2015-07-31
  8 in total

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