Literature DB >> 19038550

The dynamic personality of TATA-binding protein.

David T Auble1.   

Abstract

TATA-binding protein (TBP) is a central component of the transcription apparatus and its association with promoters is dynamically regulated genome-wide. Recent work has shed new light on the functional specificity of Mot1 and NC2, two factors that control TBP distribution and activity. These studies underscore how regulation of TBP globally influences fundamental aspects of gene expression, including the balance of transcriptional output from different types of promoters, and the amplitude and timing of gene activation.

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Year:  2008        PMID: 19038550      PMCID: PMC2933749          DOI: 10.1016/j.tibs.2008.10.008

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  25 in total

Review 1.  New problems in RNA polymerase II transcription initiation: matching the diversity of core promoters with a variety of promoter recognition factors.

Authors:  Ferenc Müller; Màté A Demény; Làszlò Tora
Journal:  J Biol Chem       Date:  2007-03-29       Impact factor: 5.157

2.  TBP, Mot1, and NC2 establish a regulatory circuit that controls DPE-dependent versus TATA-dependent transcription.

Authors:  Jer-Yuan Hsu; Tamar Juven-Gershon; Michael T Marr; Kevin J Wright; Robert Tjian; James T Kadonaga
Journal:  Genes Dev       Date:  2008-08-14       Impact factor: 11.361

3.  TATA element recognition by the TATA box-binding protein has been conserved throughout evolution.

Authors:  G A Patikoglou; J L Kim; L Sun; S H Yang; T Kodadek; S K Burley
Journal:  Genes Dev       Date:  1999-12-15       Impact factor: 11.361

4.  Mot1-mediated control of transcription complex assembly and activity.

Authors:  Arindam Dasgupta; Sarah A Juedes; Rebekka O Sprouse; David T Auble
Journal:  EMBO J       Date:  2005-04-07       Impact factor: 11.598

5.  NC2 mobilizes TBP on core promoter TATA boxes.

Authors:  Peter Schluesche; Gertraud Stelzer; Elisa Piaia; Don C Lamb; Michael Meisterernst
Journal:  Nat Struct Mol Biol       Date:  2007-11-11       Impact factor: 15.369

6.  Regulation of TATA-binding protein dynamics in living yeast cells.

Authors:  Rebekka O Sprouse; Tatiana S Karpova; Florian Mueller; Arindam Dasgupta; James G McNally; David T Auble
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-02       Impact factor: 11.205

7.  Cooperative action of NC2 and Mot1p to regulate TATA-binding protein function across the genome.

Authors:  Folkert J van Werven; Harm van Bakel; Hetty A A M van Teeffelen; A F Maarten Altelaar; Marian Groot Koerkamp; Albert J R Heck; Frank C P Holstege; H Th Marc Timmers
Journal:  Genes Dev       Date:  2008-08-14       Impact factor: 11.361

8.  A proteomics analysis of yeast Mot1p protein-protein associations: insights into mechanism.

Authors:  Diana R Arnett; Jennifer L Jennings; David L Tabb; Andrew J Link; P Anthony Weil
Journal:  Mol Cell Proteomics       Date:  2008-07-02       Impact factor: 5.911

9.  Function and structural organization of Mot1 bound to a natural target promoter.

Authors:  Rebekka O Sprouse; Inna Shcherbakova; Huiyong Cheng; Elizabeth Jamison; Michael Brenowitz; David T Auble
Journal:  J Biol Chem       Date:  2008-07-07       Impact factor: 5.157

10.  Global distribution of negative cofactor 2 subunit-alpha on human promoters.

Authors:  Thomas K Albert; Korbinian Grote; Stefan Boeing; Gertraud Stelzer; Aloys Schepers; Michael Meisterernst
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-04       Impact factor: 11.205

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  15 in total

1.  Mot1, Ino80C, and NC2 Function Coordinately to Regulate Pervasive Transcription in Yeast and Mammals.

Authors:  Yong Xue; Suman K Pradhan; Fei Sun; Constantinos Chronis; Nancy Tran; Trent Su; Christopher Van; Ajay Vashisht; James Wohlschlegel; Craig L Peterson; H T Marc Timmers; Siavash K Kurdistani; Michael F Carey
Journal:  Mol Cell       Date:  2017-07-20       Impact factor: 17.970

2.  Structure and mechanism of the Swi2/Snf2 remodeller Mot1 in complex with its substrate TBP.

Authors:  Petra Wollmann; Sheng Cui; Ramya Viswanathan; Otto Berninghausen; Melissa N Wells; Manuela Moldt; Gregor Witte; Agata Butryn; Petra Wendler; Roland Beckmann; David T Auble; Karl-Peter Hopfner
Journal:  Nature       Date:  2011-07-06       Impact factor: 49.962

Review 3.  One small step for Mot1; one giant leap for other Swi2/Snf2 enzymes?

Authors:  Ramya Viswanathan; David T Auble
Journal:  Biochim Biophys Acta       Date:  2011-05-30

4.  Two-step mechanism for modifier of transcription 1 (Mot1) enzyme-catalyzed displacement of TATA-binding protein (TBP) from DNA.

Authors:  Georgette Moyle-Heyrman; Ramya Viswanathan; Jonathan Widom; David T Auble
Journal:  J Biol Chem       Date:  2012-02-01       Impact factor: 5.157

5.  Direct interactions promote eviction of the Sir3 heterochromatin protein by the SWI/SNF chromatin remodeling enzyme.

Authors:  Benjamin J Manning; Craig L Peterson
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-01       Impact factor: 11.205

6.  RNA synthesis precision is regulated by preinitiation complex turnover.

Authors:  Kunal Poorey; Rebekka O Sprouse; Melissa N Wells; Ramya Viswanathan; Stefan Bekiranov; David T Auble
Journal:  Genome Res       Date:  2010-09-20       Impact factor: 9.043

7.  Conformational changes and catalytic inefficiency associated with Mot1-mediated TBP-DNA dissociation.

Authors:  Gregor Heiss; Evelyn Ploetz; Lena Voith von Voithenberg; Ramya Viswanathan; Samson Glaser; Peter Schluesche; Sushi Madhira; Michael Meisterernst; David T Auble; Don C Lamb
Journal:  Nucleic Acids Res       Date:  2019-04-08       Impact factor: 16.971

8.  Direct activator/co-activator interaction is essential for bacteriophage T4 middle gene expression.

Authors:  Andy H Yuan; Ann Hochschild
Journal:  Mol Microbiol       Date:  2009-10-15       Impact factor: 3.501

9.  Mot1 redistributes TBP from TATA-containing to TATA-less promoters.

Authors:  Gabriel E Zentner; Steven Henikoff
Journal:  Mol Cell Biol       Date:  2013-10-21       Impact factor: 4.272

Review 10.  The basal initiation machinery: beyond the general transcription factors.

Authors:  Timothy W Sikorski; Stephen Buratowski
Journal:  Curr Opin Cell Biol       Date:  2009-05-04       Impact factor: 8.382

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