Literature DB >> 19035639

Glutamic acid 181 is uncharged in dark-adapted visual rhodopsin.

Sivakumar Sekharan1, Volker Buss.   

Abstract

We have performed a high-level quantum chemical analysis to study the chromophore-protein interaction involving the charged (B) and/or uncharged (C) form of E181 and also a mutant E181Q model in the presence of the primary counterion E113 (A). As the magnitude of the calculated spectral shifts on either side remains within +/-10 nm, we show that the orientation of the dipole moment vector is the key to unlocking the puzzle on this contentious issue. We find that E181 is present in the uncharged (or) protonated form in the dark-adapted visual Rhodopsin, and therefore an electrostatically neutral environment is envisaged.

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Year:  2008        PMID: 19035639     DOI: 10.1021/ja805992d

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  7 in total

1.  Low-Temperature Trapping of Photointermediates of the Rhodopsin E181Q Mutant.

Authors:  Megan N Sandberg; Jordan A Greco; Nicole L Wagner; Tabitha L Amora; Lavoisier A Ramos; Min-Hsuan Chen; Barry E Knox; Robert R Birge
Journal:  SOJ Biochem       Date:  2014

2.  Glutamic acid 181 is negatively charged in the bathorhodopsin photointermediate of visual rhodopsin.

Authors:  Megan N Sandberg; Tabitha L Amora; Lavoisier S Ramos; Min-Hsuan Chen; Barry E Knox; Robert R Birge
Journal:  J Am Chem Soc       Date:  2011-02-14       Impact factor: 15.419

3.  Quantum mechanical/molecular mechanical structure, enantioselectivity, and spectroscopy of hydroxyretinals and insights into the evolution of color vision in small white butterflies.

Authors:  Sivakumar Sekharan; Shozo Yokoyama; Keiji Morokuma
Journal:  J Phys Chem B       Date:  2011-12-06       Impact factor: 2.991

4.  Retinal conformation governs pKa of protonated Schiff base in rhodopsin activation.

Authors:  Shengshuang Zhu; Michael F Brown; Scott E Feller
Journal:  J Am Chem Soc       Date:  2013-06-11       Impact factor: 15.419

5.  Color tuning in short wavelength-sensitive human and mouse visual pigments: ab initio quantum mechanics/molecular mechanics studies.

Authors:  Ahmet Altun; Shozo Yokoyama; Keiji Morokuma
Journal:  J Phys Chem A       Date:  2009-10-29       Impact factor: 2.781

6.  Photochemistry of visual pigment in a G(q) protein-coupled receptor (GPCR)--insights from structural and spectral tuning studies on squid rhodopsin.

Authors:  Sivakumar Sekharan; Ahmet Altun; Keiji Morokuma
Journal:  Chemistry       Date:  2010-02-08       Impact factor: 5.236

7.  Light-induced difference FTIR spectroscopy of primate blue-sensitive visual pigment at 163 K.

Authors:  Shunpei Hanai; Kota Katayama; Hiroo Imai; Hideki Kandori
Journal:  Biophys Physicobiol       Date:  2021-02-13
  7 in total

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