Literature DB >> 20066712

Photochemistry of visual pigment in a G(q) protein-coupled receptor (GPCR)--insights from structural and spectral tuning studies on squid rhodopsin.

Sivakumar Sekharan1, Ahmet Altun, Keiji Morokuma.   

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Year:  2010        PMID： 20066712      PMCID： PMC2827932          DOI： 10.1002/chem.200903194

Source DB:  PubMed          Journal:  Chemistry        ISSN： 0947-6539            Impact factor:   5.236


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  40 in total

Review 1.  The evolution of color vision in insects.

Authors:  A D Briscoe; L Chittka
Journal:  Annu Rev Entomol       Date:  2001       Impact factor: 19.686

2.  Functional role of internal water molecules in rhodopsin revealed by X-ray crystallography.

Authors:  Tetsuji Okada; Yoshinori Fujiyoshi; Maria Silow; Javier Navarro; Ehud M Landau; Yoshinori Shichida
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-23       Impact factor: 11.205

3.  Highly conserved glutamic acid in the extracellular IV-V loop in rhodopsins acts as the counterion in retinochrome, a member of the rhodopsin family.

Authors:  A Terakita; T Yamashita; Y Shichida
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

Review 4.  Molecular evolution of vertebrate visual pigments.

Authors:  S Yokoyama
Journal:  Prog Retin Eye Res       Date:  2000-07       Impact factor: 21.198

5.  Retinal counterion switch in the photoactivation of the G protein-coupled receptor rhodopsin.

Authors:  Elsa C Y Yan; Manija A Kazmi; Ziad Ganim; Jian-Min Hou; Douhai Pan; Belinda S W Chang; Thomas P Sakmar; Richard A Mathies
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-30       Impact factor: 11.205

6.  The Light Shall Show the Way-Or: The Conformational Changes of the Retinal Chromophore in Rhodopsin upon Light Activation.

Authors:  W Gärtner
Journal:  Angew Chem Int Ed Engl       Date:  2001       Impact factor: 15.336

7.  Vertebrate ultraviolet visual pigments: protonation of the retinylidene Schiff base and a counterion switch during photoactivation.

Authors:  Ana Karin Kusnetzow; Abhiram Dukkipati; Kunnel R Babu; Lavoisier Ramos; Barry E Knox; Robert R Birge
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-19       Impact factor: 11.205

8.  Solution and biologically relevant conformations of enantiomeric 11-cis-locked cyclopropyl retinals.

Authors:  Yukari Fujimoto; Nathan Fishkin; Gennaro Pescitelli; John Decatur; Nina Berova; Koji Nakanishi
Journal:  J Am Chem Soc       Date:  2002-06-26       Impact factor: 15.419

9.  The rhodopsin system of the squid.

Authors:  R HUBBARD; R C ST GEORGE
Journal:  J Gen Physiol       Date:  1958-01-20       Impact factor: 4.086

10.  Counterion displacement in the molecular evolution of the rhodopsin family.

Authors:  Akihisa Terakita; Mitsumasa Koyanagi; Hisao Tsukamoto; Takahiro Yamashita; Takashi Miyata; Yoshinori Shichida
Journal:  Nat Struct Mol Biol       Date:  2004-02-08       Impact factor: 15.369
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  14 in total

1.  Color vision: "OH-site" rule for seeing red and green.

Authors:  Sivakumar Sekharan; Kota Katayama; Hideki Kandori; Keiji Morokuma
Journal:  J Am Chem Soc       Date:  2012-06-18       Impact factor: 15.419

2.  Drawing the Retinal Out of Its Comfort Zone: An ONIOM(QM/MM) Study of Mutant Squid Rhodopsin.

Authors:  Sivakumar Sekharan; Keiji Morokuma
Journal:  J Phys Chem Lett       Date:  2010-01-21       Impact factor: 6.475

3.  H-bond network around retinal regulates the evolution of ultraviolet and violet vision.

Authors:  Ahmet Altun; Keiji Morokuma; Shozo Yokoyama
Journal:  ACS Chem Biol       Date:  2011-06-14       Impact factor: 5.100

4.  Quantum mechanical/molecular mechanical structure, enantioselectivity, and spectroscopy of hydroxyretinals and insights into the evolution of color vision in small white butterflies.

Authors:  Sivakumar Sekharan; Shozo Yokoyama; Keiji Morokuma
Journal:  J Phys Chem B       Date:  2011-12-06       Impact factor: 2.991

5.  QM/MM study of dehydro and dihydro β-ionone retinal analogues in squid and bovine rhodopsins: implications for vision in salamander rhodopsin.

Authors:  Sivakumar Sekharan; Ahmet Altun; Keiji Morokuma
Journal:  J Am Chem Soc       Date:  2010-10-21       Impact factor: 15.419

6.  Why 11-cis-retinal? Why not 7-cis-, 9-cis-, or 13-cis-retinal in the eye?

Authors:  Sivakumar Sekharan; Keiji Morokuma
Journal:  J Am Chem Soc       Date:  2011-11-03       Impact factor: 15.419

7.  QM/MM study of the structure, energy storage, and origin of the bathochromic shift in vertebrate and invertebrate bathorhodopsins.

Authors:  Sivakumar Sekharan; Keiji Morokuma
Journal:  J Am Chem Soc       Date:  2011-03-10       Impact factor: 15.419

Review 8.  Frontiers in Multiscale Modeling of Photoreceptor Proteins.

Authors:  Maria-Andrea Mroginski; Suliman Adam; Gil S Amoyal; Avishai Barnoy; Ana-Nicoleta Bondar; Veniamin A Borin; Jonathan R Church; Tatiana Domratcheva; Bernd Ensing; Francesca Fanelli; Nicolas Ferré; Ofer Filiba; Laura Pedraza-González; Ronald González; Cristina E González-Espinoza; Rajiv K Kar; Lukas Kemmler; Seung Soo Kim; Jacob Kongsted; Anna I Krylov; Yigal Lahav; Michalis Lazaratos; Qays NasserEddin; Isabelle Navizet; Alexander Nemukhin; Massimo Olivucci; Jógvan Magnus Haugaard Olsen; Alberto Pérez de Alba Ortíz; Elisa Pieri; Aditya G Rao; Young Min Rhee; Niccolò Ricardi; Saumik Sen; Ilia A Solov'yov; Luca De Vico; Tomasz A Wesolowski; Christian Wiebeler; Xuchun Yang; Igor Schapiro
Journal:  Photochem Photobiol       Date:  2021-02-13       Impact factor: 3.521

9.  Analysis of Conserved Glutamate and Aspartate Residues in Drosophila Rhodopsin 1 and Their Influence on Spectral Tuning.

Authors:  Lijun Zheng; David M Farrell; Ruth M Fulton; Eve E Bagg; Ernesto Salcedo; Meridee Manino; Steven G Britt
Journal:  J Biol Chem       Date:  2015-07-20       Impact factor: 5.157

10.  Structural differences and differential expression among rhabdomeric opsins reveal functional change after gene duplication in the bay scallop, Argopecten irradians (Pectinidae).

Authors:  Anita J Porath-Krause; Autum N Pairett; Davide Faggionato; Bhagyashree S Birla; Kannan Sankar; Jeanne M Serb
Journal:  BMC Evol Biol       Date:  2016-11-17       Impact factor: 3.260
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