Literature DB >> 19018587

Diversity and distribution of sediment nirS-encoding bacterial assemblages in response to environmental gradients in the eutrophied Jiaozhou Bay, China.

Hongyue Dang1, Chunyan Wang, Jing Li, Tiegang Li, Fang Tian, Wei Jin, Yongsheng Ding, Zhinan Zhang.   

Abstract

A gene-clone-library-based molecular approach was used to study the nirS-encoding bacteria-environment relationship in the sediments of the eutrophic Jiaozhou Bay. Diverse nirS sequences were recovered and most of them were related to the marine cluster I group, ubiquitous in estuarine, coastal, and marine environments. Some NirS sequences were unique to the Jiaozhou Bay, such as the marine subcluster VIIg sequences. Most of the Jiaozhou Bay NirS sequences had their closest matches originally detected in estuarine and marine sediments, especially from the Chesapeake Bay, indicating similarity of the denitrifying bacterial communities in similar coastal environments in spite of geographical distance. Multivariate statistical analyses indicated that the spatial distribution of the nirS-encoding bacterial assemblages is highly correlated with environmental factors, such as sediment silt content, NH4+ concentration, and OrgC/OrgN. The nirS-encoding bacterial assemblages in the most hypernutrified stations could be easily distinguished from that of the least eutrophic station. For the first time, the sedimentological condition was found to influence the structure and distribution of the sediment denitrifying bacterial community.

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Year:  2008        PMID: 19018587     DOI: 10.1007/s00248-008-9469-5

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  36 in total

1.  Bacterial primary colonization and early succession on surfaces in marine waters as determined by amplified rRNA gene restriction analysis and sequence analysis of 16S rRNA genes.

Authors:  H Dang; C R Lovell
Journal:  Appl Environ Microbiol       Date:  2000-02       Impact factor: 4.792

Review 2.  Molecular analysis of ammonia oxidation and denitrification in natural environments.

Authors:  H Bothe; G Jost; M Schloter; B B Ward; K Witzel
Journal:  FEMS Microbiol Rev       Date:  2000-12       Impact factor: 16.408

3.  Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness.

Authors:  Patrick D Schloss; Jo Handelsman
Journal:  Appl Environ Microbiol       Date:  2005-03       Impact factor: 4.792

4.  Linking denitrifier community structure and prevalent biogeochemical parameters in the pelagial of the central Baltic Proper (Baltic Sea).

Authors:  Michael Hannig; Gesche Braker; Joachim Dippner; Klaus Jürgens
Journal:  FEMS Microbiol Ecol       Date:  2006-08       Impact factor: 4.194

5.  Molecular analysis of the nitrogen cycle in deep-sea microorganisms from the Nankai Trough: genes for nitrification and denitrification from deep-sea environmental DNA.

Authors:  Hideyuki Tamegai; Rie Aoki; Shizuka Arakawa; Chiaki Kato
Journal:  Extremophiles       Date:  2006-10-27       Impact factor: 2.395

Review 6.  Cell biology and molecular basis of denitrification.

Authors:  W G Zumft
Journal:  Microbiol Mol Biol Rev       Date:  1997-12       Impact factor: 11.056

7.  Communities of nirS-type denitrifiers in the water column of the oxygen minimum zone in the eastern South Pacific.

Authors:  Maribeb Castro-González; Gesche Braker; Laura Farías; Osvaldo Ulloa
Journal:  Environ Microbiol       Date:  2005-09       Impact factor: 5.491

8.  Aerobic denitrifying bacteria that produce low levels of nitrous oxide.

Authors:  Naoki Takaya; Maria Antonina B Catalan-Sakairi; Yasushi Sakaguchi; Isao Kato; Zhemin Zhou; Hirofumi Shoun
Journal:  Appl Environ Microbiol       Date:  2003-06       Impact factor: 4.792

9.  Diversity and spatial distribution of sediment ammonia-oxidizing crenarchaeota in response to estuarine and environmental gradients in the Changjiang Estuary and East China Sea.

Authors:  Hongyue Dang; Xiaoxia Zhang; Jin Sun; Tiegang Li; Zhinan Zhang; Guanpin Yang
Journal:  Microbiology       Date:  2008-07       Impact factor: 2.777

10.  Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples.

Authors:  G Braker; A Fesefeldt; K P Witzel
Journal:  Appl Environ Microbiol       Date:  1998-10       Impact factor: 4.792

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  26 in total

1.  Environmental factors shape sediment anammox bacterial communities in hypernutrified Jiaozhou Bay, China.

Authors:  Hongyue Dang; Ruipeng Chen; Lin Wang; Lizhong Guo; Pingping Chen; Zuwang Tang; Fang Tian; Shaozheng Li; Martin G Klotz
Journal:  Appl Environ Microbiol       Date:  2010-09-10       Impact factor: 4.792

2.  Composition and variation of sediment bacterial and nirS-harboring bacterial communities at representative sites of the Bohai Gulf coastal zone, China.

Authors:  Xiangyu Guan; Lingling Zhu; Youxun Li; Yuxuan Xie; Mingzhang Zhao; Ximing Luo
Journal:  World J Microbiol Biotechnol       Date:  2013-11-09       Impact factor: 3.312

3.  Diversity, Abundance, and Distribution of nirS-Harboring Denitrifiers in Intertidal Sediments of the Yangtze Estuary.

Authors:  Yanling Zheng; Lijun Hou; Min Liu; Juan Gao; Guoyu Yin; Xiaofei Li; Fengyu Deng; Xianbiao Lin; Xiaofen Jiang; Fei Chen; Haibo Zong; Junliang Zhou
Journal:  Microb Ecol       Date:  2015-01-16       Impact factor: 4.552

4.  Capturing Compositional Variation in Denitrifying Communities: a Multiple-Primer Approach That Includes Epsilonproteobacteria.

Authors:  Sheryl A Murdock; S Kim Juniper
Journal:  Appl Environ Microbiol       Date:  2017-03-02       Impact factor: 4.792

5.  Diversity and Abundance of the Denitrifying Microbiota in the Sediment of Eastern China Marginal Seas and the Impact of Environmental Factors.

Authors:  Minghong Gao; Jiwen Liu; Yanlu Qiao; Meixun Zhao; Xiao-Hua Zhang
Journal:  Microb Ecol       Date:  2016-12-06       Impact factor: 4.552

6.  Spatiotemporal Characterization of San Francisco Bay Denitrifying Communities: a Comparison of nirK and nirS Diversity and Abundance.

Authors:  Jessica A Lee; Christopher A Francis
Journal:  Microb Ecol       Date:  2016-10-05       Impact factor: 4.552

7.  Community composition of nirS-type denitrifier in a shallow eutrophic lake.

Authors:  Jiang-Ke Yang; Zhan-Bing Cheng; Jia Li; Li-Hong Miao
Journal:  Microb Ecol       Date:  2013-07-25       Impact factor: 4.552

8.  Abundance and distribution of microorganisms involved in denitrification in sediments of a Myriophyllum elatinoides purification system for treating swine wastewater.

Authors:  Xi Li; Miaomiao Zhang; Feng Liu; Yong Li; Yang He; Shunan Zhang; Jinshui Wu
Journal:  Environ Sci Pollut Res Int       Date:  2015-07-14       Impact factor: 4.223

9.  Community structures and distribution of anaerobic ammonium oxidizing and nirS-encoding nitrite-reducing bacteria in surface sediments of the South China Sea.

Authors:  Meng Li; Yiguo Hong; Huiluo Cao; Ji-Dong Gu
Journal:  Microb Ecol       Date:  2013-01-29       Impact factor: 4.552

10.  Phylogenetic diversity of nitrogen-utilizing genes in hydrothermal chimneys from 3 middle ocean ridges.

Authors:  Huiluo Cao; Zongze Shao; Jiangtao Li; Weipeng Zhang; Pei-Yuan Qian
Journal:  Extremophiles       Date:  2015-09-14       Impact factor: 2.395

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