Literature DB >> 19011092

Quantitative single-molecule imaging by confocal laser scanning microscopy.

Vladana Vukojevic1, Marcus Heidkamp, Yu Ming, Björn Johansson, Lars Terenius, Rudolf Rigler.   

Abstract

A new approach to quantitative single-molecule imaging by confocal laser scanning microscopy (CLSM) is presented. It relies on fluorescence intensity distribution to analyze the molecular occurrence statistics captured by digital imaging and enables direct determination of the number of fluorescent molecules and their diffusion rates without resorting to temporal or spatial autocorrelation analyses. Digital images of fluorescent molecules were recorded by using fast scanning and avalanche photodiode detectors. In this way the signal-to-background ratio was significantly improved, enabling direct quantitative imaging by CLSM. The potential of the proposed approach is demonstrated by using standard solutions of fluorescent dyes, fluorescently labeled DNA molecules, quantum dots, and the Enhanced Green Fluorescent Protein in solution and in live cells. The method was verified by using fluorescence correlation spectroscopy. The relevance for biological applications, in particular, for live cell imaging, is discussed.

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Year:  2008        PMID: 19011092      PMCID: PMC2587633          DOI: 10.1073/pnas.0809250105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  19 in total

1.  Fluorescence-intensity distribution analysis and its application in biomolecular detection technology.

Authors:  P Kask; K Palo; D Ullmann; K Gall
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

2.  Fluorescence intensity multiple distributions analysis: concurrent determination of diffusion times and molecular brightness.

Authors:  K Palo; U Mets; S Jäger; P Kask; K Gall
Journal:  Biophys J       Date:  2000-12       Impact factor: 4.033

Review 3.  Quick tour of fluorescence correlation spectroscopy from its inception.

Authors:  Elliot L Elson
Journal:  J Biomed Opt       Date:  2004 Sep-Oct       Impact factor: 3.170

4.  Fluctuation correlation spectroscopy with a laser-scanning microscope: exploiting the hidden time structure.

Authors:  Michelle A Digman; Parijat Sengupta; Paul W Wiseman; Claire M Brown; Alan R Horwitz; Enrico Gratton
Journal:  Biophys J       Date:  2005-03-25       Impact factor: 4.033

Review 5.  Nanoscale resolution in GFP-based microscopy.

Authors:  Katrin I Willig; Robert R Kellner; Rebecca Medda; Birka Hein; Stefan Jakobs; Stefan W Hell
Journal:  Nat Methods       Date:  2006-09       Impact factor: 28.547

6.  Photon counting histograms for diffusing fluorophores.

Authors:  Irina V Gopich; Attila Szabo
Journal:  J Phys Chem B       Date:  2005-09-22       Impact factor: 2.991

7.  Major signal increase in fluorescence microscopy through dark-state relaxation.

Authors:  Gerald Donnert; Christian Eggeling; Stefan W Hell
Journal:  Nat Methods       Date:  2006-12-10       Impact factor: 28.547

Review 8.  Accounting for triplet and saturation effects in FCS measurements.

Authors:  Lloyd M Davis; Guoqing Shen
Journal:  Curr Pharm Biotechnol       Date:  2006-08       Impact factor: 2.837

9.  Determining the stoichiometry of protein heterocomplexes in living cells with fluorescence fluctuation spectroscopy.

Authors:  Yan Chen; Joachim D Müller
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-16       Impact factor: 11.205

10.  Photobleaching of Fluorescent Dyes under Conditions Used for Single-Molecule Detection:  Evidence of Two-Step Photolysis.

Authors:  C Eggeling; J Widengren; R Rigler; C A Seidel
Journal:  Anal Chem       Date:  1998-07-01       Impact factor: 6.986

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  22 in total

1.  Revealing protein oligomerization and densities in situ using spatial intensity distribution analysis.

Authors:  Antoine G Godin; Santiago Costantino; Louis-Etienne Lorenzo; Jody L Swift; Mikhail Sergeev; Alfredo Ribeiro-da-Silva; Yves De Koninck; Paul W Wiseman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-11       Impact factor: 11.205

2.  Function and specificity of synthetic Hox transcription factors in vivo.

Authors:  Dimitrios K Papadopoulos; Vladana Vukojevic; Yoshitsugu Adachi; Lars Terenius; Rudolf Rigler; Walter J Gehring
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-10       Impact factor: 11.205

3.  Quantitative study of synthetic Hox transcription factor-DNA interactions in live cells.

Authors:  Vladana Vukojevic; Dimitrios K Papadopoulos; Lars Terenius; Walter J Gehring; Rudolf Rigler
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-10       Impact factor: 11.205

4.  Genomic DNA hypomethylation by histone deacetylase inhibition implicates DNMT1 nuclear dynamics.

Authors:  Mohsen Karimi Arzenani; Atosa Esteki Zade; Yu Ming; Susanne J H Vijverberg; Zhe Zhang; Zahidul Khan; Syed Sadique; Lorenz Kallenbach; LiFu Hu; Vladana Vukojević; Tomas J Ekström
Journal:  Mol Cell Biol       Date:  2011-07-26       Impact factor: 4.272

5.  Interaction of the signaling state analog and the apoprotein form of the orange carotenoid protein with the fluorescence recovery protein.

Authors:  Marcus Moldenhauer; Nikolai N Sluchanko; Neslihan N Tavraz; Cornelia Junghans; David Buhrke; Mario Willoweit; Leonardo Chiappisi; Franz-Josef Schmitt; Vladana Vukojević; Evgeny A Shirshin; Vladimir Y Ponomarev; Vladimir Z Paschenko; Michael Gradzielski; Eugene G Maksimov; Thomas Friedrich
Journal:  Photosynth Res       Date:  2017-02-24       Impact factor: 3.573

6.  GPR37 protein trafficking to the plasma membrane regulated by prosaposin and GM1 gangliosides promotes cell viability.

Authors:  Ebba Gregorsson Lundius; Vladana Vukojevic; Ellen Hertz; Nikolas Stroth; Andreas Cederlund; Masao Hiraiwa; Lars Terenius; Per Svenningsson
Journal:  J Biol Chem       Date:  2013-12-26       Impact factor: 5.157

7.  Cytokines Induce Faster Membrane Diffusion of MHC Class I and the Ly49A Receptor in a Subpopulation of Natural Killer Cells.

Authors:  Sunitha Bagawath-Singh; Elina Staaf; Arie Jan Stoppelenburg; Thiemo Spielmann; Taku Kambayashi; Jerker Widengren; Sofia Johansson
Journal:  Front Immunol       Date:  2016-02-04       Impact factor: 7.561

8.  Identification of a localized nonsense-mediated decay pathway at the endoplasmic reticulum.

Authors:  Dasa Longman; Kathryn A Jackson-Jones; Magdalena M Maslon; Laura C Murphy; Robert S Young; Jack J Stoddart; Nele Hug; Martin S Taylor; Dimitrios K Papadopoulos; Javier F Cáceres
Journal:  Genes Dev       Date:  2020-07-02       Impact factor: 11.361

9.  Plasma membrane poration by opioid neuropeptides: a possible mechanism of pathological signal transduction.

Authors:  O Maximyuk; V Khmyz; C-J Lindskog; V Vukojević; T Ivanova; I Bazov; K F Hauser; G Bakalkin; O Krishtal
Journal:  Cell Death Dis       Date:  2015-03-12       Impact factor: 8.469

10.  Control of Hox transcription factor concentration and cell-to-cell variability by an auto-regulatory switch.

Authors:  Dimitrios K Papadopoulos; Kassiani Skouloudaki; Ylva Engström; Lars Terenius; Rudolf Rigler; Christoph Zechner; Vladana Vukojević; Pavel Tomancak
Journal:  Development       Date:  2019-01-25       Impact factor: 6.868

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