Literature DB >> 19004797

An artificial molecular switch that mimics the visual pigment and completes its photocycle in picoseconds.

Adalgisa Sinicropi1, Elena Martin, Mikhail Ryazantsev, Jan Helbing, Julien Briand, Divya Sharma, Jérémie Léonard, Stefan Haacke, Andrea Cannizzo, Majed Chergui, Vinicio Zanirato, Stefania Fusi, Fabrizio Santoro, Riccardo Basosi, Nicolas Ferré, Massimo Olivucci.   

Abstract

Single molecules that act as light-energy transducers (e.g., converting the energy of a photon into atomic-level mechanical motion) are examples of minimal molecular devices. Here, we focus on a molecular switch designed by merging a conformationally locked diarylidene skeleton with a retinal-like Schiff base and capable of mimicking, in solution, different aspects of the transduction of the visual pigment Rhodopsin. Complementary ab initio multiconfigurational quantum chemistry-based computations and time-resolved spectroscopy are used to follow the light-induced isomerization of the switch in methanol. The results show that, similar to rhodopsin, the isomerization occurs on a 0.3-ps time scale and is followed by <10-ps cooling and solvation. The entire (2-photon-powered) switch cycle was traced by following the evolution of its infrared spectrum. These measurements indicate that a full cycle can be completed within 20 ps.

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Year:  2008        PMID: 19004797      PMCID: PMC2584735          DOI: 10.1073/pnas.0802376105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  16 in total

Review 1.  Advances in determination of a high-resolution three-dimensional structure of rhodopsin, a model of G-protein-coupled receptors (GPCRs).

Authors:  D C Teller; T Okada; C A Behnke; K Palczewski; R E Stenkamp
Journal:  Biochemistry       Date:  2001-07-03       Impact factor: 3.162

2.  Ultrafast spectroscopy reveals subnanosecond peptide conformational dynamics and validates molecular dynamics simulation.

Authors:  Sebastian Spörlein; Heiko Carstens; Helmut Satzger; Christian Renner; Raymond Behrendt; Luis Moroder; Paul Tavan; Wolfgang Zinth; Josef Wachtveitl
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-11       Impact factor: 11.205

3.  Picosecond conformational transition and equilibration of a cyclic peptide.

Authors:  Jens Bredenbeck; Jan Helbing; Arne Sieg; Tobias Schrader; Wolfgang Zinth; Christian Renner; Raymond Behrendt; Luis Moroder; Josef Wachtveitl; Peter Hamm
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-07       Impact factor: 11.205

4.  Insights for light-driven molecular devices from ab initio multiple spawning excited-state dynamics of organic and biological chromophores.

Authors:  Todd J Martínez
Journal:  Acc Chem Res       Date:  2006-02       Impact factor: 22.384

Review 5.  The art of building small: from molecular switches to molecular motors.

Authors:  Ben L Feringa
Journal:  J Org Chem       Date:  2007-07-13       Impact factor: 4.354

6.  MHz unidirectional rotation of molecular rotary motors.

Authors:  Martin Klok; Nicola Boyle; Mary T Pryce; Auke Meetsma; Wesley R Browne; Ben L Feringa
Journal:  J Am Chem Soc       Date:  2008-07-18       Impact factor: 15.419

Review 7.  Photoisomerization in rhodopsin.

Authors:  H Kandori; Y Shichida; T Yoshizawa
Journal:  Biochemistry (Mosc)       Date:  2001-11       Impact factor: 2.487

8.  Structure, initial excited-state relaxation, and energy storage of rhodopsin resolved at the multiconfigurational perturbation theory level.

Authors:  Tadeusz Andruniów; Nicolas Ferré; Massimo Olivucci
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-16       Impact factor: 11.205

9.  The bis-barium complex of a butterfly crown ether as a phototunable supramolecular catalyst.

Authors:  Roberta Cacciapaglia; Stefano Di Stefano; Luigi Mandolini
Journal:  J Am Chem Soc       Date:  2003-02-26       Impact factor: 15.419

10.  Tracking the excited-state time evolution of the visual pigment with multiconfigurational quantum chemistry.

Authors:  Luis Manuel Frutos; Tadeusz Andruniów; Fabrizio Santoro; Nicolas Ferré; Massimo Olivucci
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-30       Impact factor: 11.205

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  5 in total

1.  a-ARM: Automatic Rhodopsin Modeling with Chromophore Cavity Generation, Ionization State Selection, and External Counterion Placement.

Authors:  Laura Pedraza-González; Luca De Vico; Marı A Del Carmen Marı N; Francesca Fanelli; Massimo Olivucci
Journal:  J Chem Theory Comput       Date:  2019-04-12       Impact factor: 6.006

2.  Engineering the vibrational coherence of vision into a synthetic molecular device.

Authors:  Moussa Gueye; Madushanka Manathunga; Damianos Agathangelou; Yoelvis Orozco; Marco Paolino; Stefania Fusi; Stefan Haacke; Massimo Olivucci; Jérémie Léonard
Journal:  Nat Commun       Date:  2018-01-22       Impact factor: 14.919

Review 3.  Designing light-driven rotary molecular motors.

Authors:  Daisy R S Pooler; Anouk S Lubbe; Stefano Crespi; Ben L Feringa
Journal:  Chem Sci       Date:  2021-10-20       Impact factor: 9.825

4.  Computational and Spectroscopic Characterization of the Photocycle of an Artificial Rhodopsin.

Authors:  Madushanka Manathunga; Adam J Jenkins; Yoelvis Orozco-Gonzalez; Alireza Ghanbarpour; Babak Borhan; James H Geiger; Delmar S Larsen; Massimo Olivucci
Journal:  J Phys Chem Lett       Date:  2020-05-13       Impact factor: 6.888

5.  A voltage-dependent fluorescent indicator for optogenetic applications, archaerhodopsin-3: Structure and optical properties from in silico modeling.

Authors:  Dmitrii M Nikolaev; Anton Emelyanov; Vitaly M Boitsov; Maxim S Panov; Mikhail N Ryazantsev
Journal:  F1000Res       Date:  2017-01-11
  5 in total

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