Literature DB >> 19003855

The pre-omics era: the early days of two-dimensional gels.

Patrick H O'Farrell1.   

Abstract

I present a personal view of the beginning of two-dimensional gels and unsanctioned proteomics. I was still a young graduate student in the early 1970s when I developed methods for two-dimensional gel electrophoresis that became widely used. Though the method gave us the capacity to do things that had never been done, the value of global enumeration of proteins was not appreciated, and we were still two decades away from the invention of the term proteomics. I describe a period of exploration where, by exercising our new capability, we conducted the first proteomic type expression experiments, and made unforeseen contributions to advances in biology. Detection of single-amino acid substitutions validated genetic selections in cultured cells, and revealed a regulatory system that maintains the accuracy of protein synthesis by assuring an unbiased supply of its substrates. We documented biologic control with a dynamic range >10(8) fold, and, in a surprising turn, we identified an approach that provided a major breakthrough in recombinant DNA technology, the ability to express cloned sequences in Escherichia coli. The challenge then and now is to use a capability for global analysis to produce new insights into fundamental aspects of biology and to drive substantive technical advances.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 19003855      PMCID: PMC2731566          DOI: 10.1002/pmic.200800719

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  31 in total

1.  Proceedings: Catabolite repression as a pleiotropic response.

Authors:  P H O'Farrell
Journal:  J Biochem       Date:  1976-04       Impact factor: 3.387

2.  The glucocorticoid domain: steroid-mediated changes in the rate of synthesis of rat hepatoma proteins.

Authors:  R D Ivarie; P H O'Farrell
Journal:  Cell       Date:  1978-01       Impact factor: 41.582

3.  High resolution two-dimensional electrophoresis of human plasma proteins.

Authors:  L Anderson; N G Anderson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

4.  The suppression of defective translation by ppGpp and its role in the stringent response.

Authors:  P H O'Farrell
Journal:  Cell       Date:  1978-07       Impact factor: 41.582

5.  Stuttering: high-level mistranslation in animal and bacterial cells.

Authors:  J Parker; J W Pollard; J D Friesen; C P Stanners
Journal:  Proc Natl Acad Sci U S A       Date:  1978-03       Impact factor: 11.205

6.  Peptide mapping by limited proteolysis in sodium dodecyl sulfate and analysis by gel electrophoresis.

Authors:  D W Cleveland; S G Fischer; M W Kirschner; U K Laemmli
Journal:  J Biol Chem       Date:  1977-02-10       Impact factor: 5.157

7.  Transcription and translation of prereplicative bacteriophage T4 genes in vitro.

Authors:  P Z O'Farrell; L M Gold
Journal:  J Biol Chem       Date:  1973-08-10       Impact factor: 5.157

8.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

9.  Protein mapping by combined isoelectric focusing and electrophoresis of mouse tissues. A novel approach to testing for induced point mutations in mammals.

Authors:  J Klose
Journal:  Humangenetik       Date:  1975

10.  Expression in Escherichia coli of a chemically synthesized gene for the hormone somatostatin.

Authors:  K Itakura; T Hirose; R Crea; A D Riggs; H L Heyneker; F Bolivar; H W Boyer
Journal:  Science       Date:  1977-12-09       Impact factor: 47.728

View more
  7 in total

Review 1.  Aptamers and the next generation of diagnostic reagents.

Authors:  Varatharasa Thiviyanathan; David G Gorenstein
Journal:  Proteomics Clin Appl       Date:  2012-12       Impact factor: 3.494

Review 2.  The Use of Proteomics in Assisted Reproduction.

Authors:  Ioanna Kosteria; Athanasios K Anagnostopoulos; Christina Kanaka-Gantenbein; George P Chrousos; George T Tsangaris
Journal:  In Vivo       Date:  2017 May-Jun       Impact factor: 2.155

3.  Risk assessment and communication tools for genotype associations with multifactorial phenotypes: the concept of "edge effect" and cultivating an ethical bridge between omics innovations and society.

Authors:  Vural Ozdemir; Guilherme Suarez-Kurtz; Raphaëlle Stenne; Andrew A Somogyi; Toshiyuki Someya; S Oğuz Kayaalp; Eugene Kolker
Journal:  OMICS       Date:  2009-02

4.  From SOMAmer-based biomarker discovery to diagnostic and clinical applications: a SOMAmer-based, streamlined multiplex proteomic assay.

Authors:  Stephan Kraemer; Jonathan D Vaught; Christopher Bock; Larry Gold; Evaldas Katilius; Tracy R Keeney; Nancy Kim; Nicholas A Saccomano; Sheri K Wilcox; Dom Zichi; Glenn M Sanders
Journal:  PLoS One       Date:  2011-10-17       Impact factor: 3.240

Review 5.  Comparative Skeletal Muscle Proteomics Using Two-Dimensional Gel Electrophoresis.

Authors:  Sandra Murphy; Paul Dowling; Kay Ohlendieck
Journal:  Proteomes       Date:  2016-09-09

Review 6.  The Energy Metabolism Dysfunction in Psychiatric Disorders Postmortem Brains: Focus on Proteomic Evidence.

Authors:  Giuliana S Zuccoli; Verônica M Saia-Cereda; Juliana M Nascimento; Daniel Martins-de-Souza
Journal:  Front Neurosci       Date:  2017-09-07       Impact factor: 4.677

Review 7.  Omics Approaches Applied to Penicillium chrysogenum and Penicillin Production: Revealing the Secrets of Improved Productivity.

Authors:  Carlos García-Estrada; Juan F Martín; Laura Cueto; Carlos Barreiro
Journal:  Genes (Basel)       Date:  2020-06-26       Impact factor: 4.096

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.