Literature DB >> 18999647

Persistence of structure over fluctuations in biological electron-transfer reactions.

Ilya A Balabin1, David N Beratan, Spiros S Skourtis.   

Abstract

In the soft-wet environment of biomolecular electron transfer, it is possible that structural fluctuations could wash out medium-specific electronic effects on electron tunneling rates. We show that beyond a transition distance (2-3 A in water and 6-7 A in proteins), fluctuation contributions to the mean-squared donor-to-acceptor tunneling matrix element are likely to dominate over the average matrix element. Even though fluctuations dominate the tunneling mechanism at larger distances, we find that the protein fold is "remembered" by the electronic coupling, and structure remains a key determinant of electron transfer kinetics.

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Year:  2008        PMID: 18999647      PMCID: PMC2756540          DOI: 10.1103/PhysRevLett.101.158102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  9 in total

1.  Dynamically controlled protein tunneling paths in photosynthetic reaction centers.

Authors:  I A Balabin; J N Onuchic
Journal:  Science       Date:  2000-10-06       Impact factor: 47.728

Review 2.  Dynamics of biochemical and biophysical reactions: insight from computer simulations.

Authors:  A Warshel; W W Parson
Journal:  Q Rev Biophys       Date:  2001-11       Impact factor: 5.318

Review 3.  Electron tunneling through proteins.

Authors:  Harry B Gray; Jay R Winkler
Journal:  Q Rev Biophys       Date:  2003-08       Impact factor: 5.318

4.  Protein dynamics and electron transfer: electronic decoherence and non-Condon effects.

Authors:  Spiros S Skourtis; Ilya A Balabin; Tsutomu Kawatsu; David N Beratan
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-28       Impact factor: 11.205

5.  The nature of aqueous tunneling pathways between electron-transfer proteins.

Authors:  Jianping Lin; Ilya A Balabin; David N Beratan
Journal:  Science       Date:  2005-11-25       Impact factor: 47.728

6.  Comparative study of perturbative methods for computing electron transfer tunneling matrix elements with a nonorthogonal basis set.

Authors:  Antonios Teklos; Spiros S Skourtis
Journal:  J Chem Phys       Date:  2006-12-28       Impact factor: 3.488

7.  Coupling coherence distinguishes structure sensitivity in protein electron transfer.

Authors:  Tatiana R Prytkova; Igor V Kurnikov; David N Beratan
Journal:  Science       Date:  2007-02-02       Impact factor: 47.728

8.  PNA versus DNA: effects of structural fluctuations on electronic structure and hole-transport mechanisms.

Authors:  Elizabeth Hatcher; Alexander Balaeff; Shahar Keinan; Ravindra Venkatramani; David N Beratan
Journal:  J Am Chem Soc       Date:  2008-08-12       Impact factor: 15.419

9.  Tryptophan-accelerated electron flow through proteins.

Authors:  Crystal Shih; Anna Katrine Museth; Malin Abrahamsson; Ana Maria Blanco-Rodriguez; Angel J Di Bilio; Jawahar Sudhamsu; Brian R Crane; Kate L Ronayne; Mike Towrie; Antonín Vlcek; John H Richards; Jay R Winkler; Harry B Gray
Journal:  Science       Date:  2008-06-27       Impact factor: 47.728

  9 in total
  19 in total

1.  Surface residues dynamically organize water bridges to enhance electron transfer between proteins.

Authors:  Aurélien de la Lande; Nathan S Babcock; Jan Rezác; Barry C Sanders; Dennis R Salahub
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-14       Impact factor: 11.205

2.  Coherence in electron transfer pathways.

Authors:  Spiros S Skourtis; David N Beratan; David H Waldeck
Journal:  Procedia Chem       Date:  2011-01-01

3.  Alternative ground states enable pathway switching in biological electron transfer.

Authors:  Luciano A Abriata; Damián Álvarez-Paggi; Gabriela N Ledesma; Ninian J Blackburn; Alejandro J Vila; Daniel H Murgida
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-10       Impact factor: 11.205

Review 4.  Biochemistry and theory of proton-coupled electron transfer.

Authors:  Agostino Migliore; Nicholas F Polizzi; Michael J Therien; David N Beratan
Journal:  Chem Rev       Date:  2014-04-01       Impact factor: 60.622

Review 5.  Mechanisms for DNA charge transport.

Authors:  Joseph C Genereux; Jacqueline K Barton
Journal:  Chem Rev       Date:  2010-03-10       Impact factor: 60.622

6.  Exploring biological electron transfer pathway dynamics with the Pathways plugin for VMD.

Authors:  Ilya A Balabin; Xiangqian Hu; David N Beratan
Journal:  J Comput Chem       Date:  2012-02-01       Impact factor: 3.376

7.  Experimental evidence for water mediated electron transfer through bis-amino acid donor-bridge-acceptor oligomers.

Authors:  Subhasis Chakrabarti; Matthew F L Parker; Christopher W Morgan; Christian E Schafmeister; David H Waldeck
Journal:  J Am Chem Soc       Date:  2009-02-18       Impact factor: 15.419

8.  Intramolecular electron transfer in sulfite-oxidizing enzymes: elucidating the role of a conserved active site arginine.

Authors:  Safia Emesh; Trevor D Rapson; Asha Rajapakshe; Ulrike Kappler; Paul V Bernhardt; Gordon Tollin; John H Enemark
Journal:  Biochemistry       Date:  2009-03-17       Impact factor: 3.162

Review 9.  Steering electrons on moving pathways.

Authors:  David N Beratan; Spiros S Skourtis; Ilya A Balabin; Alexander Balaeff; Shahar Keinan; Ravindra Venkatramani; Dequan Xiao
Journal:  Acc Chem Res       Date:  2009-10-20       Impact factor: 22.384

10.  Distance-independent charge recombination kinetics in cytochrome c-cytochrome c peroxidase complexes: compensating changes in the electronic coupling and reorganization energies.

Authors:  Nan Jiang; Aleksey Kuznetsov; Judith M Nocek; Brian M Hoffman; Brian R Crane; Xiangqian Hu; David N Beratan
Journal:  J Phys Chem B       Date:  2013-07-29       Impact factor: 2.991

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