Literature DB >> 11852595

Dynamics of biochemical and biophysical reactions: insight from computer simulations.

A Warshel1, W W Parson.   

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Year:  2001        PMID: 11852595     DOI: 10.1017/s0033583501003730

Source DB:  PubMed          Journal:  Q Rev Biophys        ISSN: 0033-5835            Impact factor:   5.318


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  59 in total

1.  Simulating large nuclear quantum mechanical corrections in hydrogen atom transfer reactions in metalloenzymes.

Authors:  Mats H M Olsson; Per E M Siegbahn; Arieh Warshel
Journal:  J Biol Inorg Chem       Date:  2003-12-09       Impact factor: 3.358

2.  Self-regulation phenomena applied to bacterial reaction centers: 2. Nonequilibrium adiabatic potential: dark and light conformations revisited.

Authors:  Alexander O Goushcha; Anthony J Manzo; Gary W Scott; Leonid N Christophorov; Peter P Knox; Yuri M Barabash; Marina T Kapoustina; Natalja M Berezetska; Valery N Kharkyanen
Journal:  Biophys J       Date:  2003-02       Impact factor: 4.033

3.  Molecular dynamics investigation of primary photoinduced events in the activation of rhodopsin.

Authors:  Jan Saam; Emad Tajkhorshid; Shigehiko Hayashi; Klaus Schulten
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

4.  Interprotein electron transfer from cytochrome c2 to photosynthetic reaction center: tunneling across an aqueous interface.

Authors:  Osamu Miyashita; Melvin Y Okamura; José N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-28       Impact factor: 11.205

5.  Characterization of protein matrix motions in the Rb. sphaeroides photosynthetic reaction center.

Authors:  Ileana Stoica
Journal:  J Mol Model       Date:  2005-12-21       Impact factor: 1.810

6.  Pathways and timescales of primary charge separation in the photosystem II reaction center as revealed by a simultaneous fit of time-resolved fluorescence and transient absorption.

Authors:  Vladimir I Novoderezhkin; Elena G Andrizhiyevskaya; Jan P Dekker; Rienk van Grondelle
Journal:  Biophys J       Date:  2005-06-24       Impact factor: 4.033

7.  Coherent electron transfer in the primary act of bacterial photosynthesis: a model based on Redfield theory.

Authors:  V I Novoderezhkin; A G Yakovlev; V A Shuvalov
Journal:  Dokl Biochem Biophys       Date:  2005 May-Jun       Impact factor: 0.788

8.  The role of enzyme dynamics and tunnelling in catalysing hydride transfer: studies of distal mutants of dihydrofolate reductase.

Authors:  Lin Wang; Nina M Goodey; Stephen J Benkovic; Amnon Kohen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-08-29       Impact factor: 6.237

9.  Transition state theory can be used in studies of enzyme catalysis: lessons from simulations of tunnelling and dynamical effects in lipoxygenase and other systems.

Authors:  Mats H M Olsson; Janez Mavri; Arieh Warshel
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-08-29       Impact factor: 6.237

Review 10.  Multidimensional tunneling, recrossing, and the transmission coefficient for enzymatic reactions.

Authors:  Jingzhi Pu; Jiali Gao; Donald G Truhlar
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

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