Literature DB >> 18999147

Extracting structured medication event information from discharge summaries.

Sigfried Gold1, Noémie Elhadad, Xinxin Zhu, James J Cimino, George Hripcsak.   

Abstract

We present a method that extracts medication information from discharge summaries. The program relies on parsing rules written as a set of regular expressions and on a user-configurable drug lexicon. Our evaluation shows a precision of 94% and recall of 83% in the extraction of medication information. We use a broader definition of medication information than previous studies, including drug names appearing with and without dosage information, misspelled drug names, and contextual information.

Mesh:

Year:  2008        PMID: 18999147      PMCID: PMC2655993     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  4 in total

1.  Applying the desiderata for controlled medical vocabularies to drug information databases.

Authors:  L M Lau; S H Lam
Journal:  Proc AMIA Symp       Date:  1999

2.  Study of effect of drug lexicons on medication extraction from electronic medical records.

Authors:  E Sirohi; P Peissig
Journal:  Pac Symp Biocomput       Date:  2005

3.  An algorithm to derive a numerical daily dose from unstructured text dosage instructions.

Authors:  Anoop D Shah; Carlos Martinez
Journal:  Pharmacoepidemiol Drug Saf       Date:  2006-03       Impact factor: 2.890

4.  Automating concept identification in the electronic medical record: an experiment in extracting dosage information.

Authors:  D A Evans; N D Brownlow; W R Hersh; E M Campbell
Journal:  Proc AMIA Annu Fall Symp       Date:  1996
  4 in total
  27 in total

1.  Using Medical Text Extraction, Reasoning and Mapping System (MTERMS) to process medication information in outpatient clinical notes.

Authors:  Li Zhou; Joseph M Plasek; Lisa M Mahoney; Neelima Karipineni; Frank Chang; Xuemin Yan; Fenny Chang; Dana Dimaggio; Debora S Goldman; Roberto A Rocha
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22

2.  Linguistic approach for identification of medication names and related information in clinical narratives.

Authors:  Thierry Hamon; Natalia Grabar
Journal:  J Am Med Inform Assoc       Date:  2010 Sep-Oct       Impact factor: 4.497

3.  Extracting Rx information from clinical narrative.

Authors:  James G Mork; Olivier Bodenreider; Dina Demner-Fushman; Rezarta Islamaj Dogan; François-Michel Lang; Zhiyong Lu; Aurélie Névéol; Lee Peters; Sonya E Shooshan; Alan R Aronson
Journal:  J Am Med Inform Assoc       Date:  2010 Sep-Oct       Impact factor: 4.497

4.  Improving textual medication extraction using combined conditional random fields and rule-based systems.

Authors:  Domonkos Tikk; Illés Solt
Journal:  J Am Med Inform Assoc       Date:  2010 Sep-Oct       Impact factor: 4.497

5.  Extracting medical information from narrative patient records: the case of medication-related information.

Authors:  Louise Deléger; Cyril Grouin; Pierre Zweigenbaum
Journal:  J Am Med Inform Assoc       Date:  2010 Sep-Oct       Impact factor: 4.497

6.  High accuracy information extraction of medication information from clinical notes: 2009 i2b2 medication extraction challenge.

Authors:  Jon Patrick; Min Li
Journal:  J Am Med Inform Assoc       Date:  2010 Sep-Oct       Impact factor: 4.497

7.  Lancet: a high precision medication event extraction system for clinical text.

Authors:  Zuofeng Li; Feifan Liu; Lamont Antieau; Yonggang Cao; Hong Yu
Journal:  J Am Med Inform Assoc       Date:  2010 Sep-Oct       Impact factor: 4.497

8.  Integrating existing natural language processing tools for medication extraction from discharge summaries.

Authors:  Son Doan; Lisa Bastarache; Sergio Klimkowski; Joshua C Denny; Hua Xu
Journal:  J Am Med Inform Assoc       Date:  2010 Sep-Oct       Impact factor: 4.497

9.  Extracting medication information from clinical text.

Authors:  Ozlem Uzuner; Imre Solti; Eithon Cadag
Journal:  J Am Med Inform Assoc       Date:  2010 Sep-Oct       Impact factor: 4.497

Review 10.  Natural language processing systems for capturing and standardizing unstructured clinical information: A systematic review.

Authors:  Kory Kreimeyer; Matthew Foster; Abhishek Pandey; Nina Arya; Gwendolyn Halford; Sandra F Jones; Richard Forshee; Mark Walderhaug; Taxiarchis Botsis
Journal:  J Biomed Inform       Date:  2017-07-17       Impact factor: 6.317

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