Literature DB >> 16170830

An algorithm to derive a numerical daily dose from unstructured text dosage instructions.

Anoop D Shah1, Carlos Martinez.   

Abstract

PURPOSE: The General Practice Research Database (GPRD) is a database of longitudinal patient records from general practices in the United Kingdom. It is an important data source for pharmacoepidemiology studies, but until now it has been tedious to calculate the daily dose and duration of exposure to drugs prescribed. This is because general practitioners routinely record dosage instructions as free text rather than in a structured way. The objective was to develop and assess the validity of an automated algorithm to derive the daily dose from text dosage instructions.
METHODS: A computer program was developed to derive numerical information from unstructured text dosage instructions. It was tested on dosage texts from a random sample of one million prescription entries. A random sample of 1,000 of these converted texts were manually checked for their accuracy.
RESULTS: Out of the sample of one million prescription entries, 74.5% had text containing the daily dose, 14.5% had text but did not include a quantitative daily dose statement and 11.0% had no text entered. Of the 1000 texts which were checked manually, 767 stated the daily dose. The program interpreted 758 (98.8%) of these correctly, produced errors in four cases and failed to extract the dose from five texts.
CONCLUSIONS: An automated algorithm has been developed which can accurately extract the daily dose from almost 99% of general practitioners' text dosage instructions. It increases the utility of GPRD and other prescription data sources by enabling researchers to estimate the duration of drug exposure more efficiently.

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Year:  2006        PMID: 16170830     DOI: 10.1002/pds.1151

Source DB:  PubMed          Journal:  Pharmacoepidemiol Drug Saf        ISSN: 1053-8569            Impact factor:   2.890


  12 in total

1.  Linguistic approach for identification of medication names and related information in clinical narratives.

Authors:  Thierry Hamon; Natalia Grabar
Journal:  J Am Med Inform Assoc       Date:  2010 Sep-Oct       Impact factor: 4.497

2.  Extracting medical information from narrative patient records: the case of medication-related information.

Authors:  Louise Deléger; Cyril Grouin; Pierre Zweigenbaum
Journal:  J Am Med Inform Assoc       Date:  2010 Sep-Oct       Impact factor: 4.497

3.  Extracting structured medication event information from discharge summaries.

Authors:  Sigfried Gold; Noémie Elhadad; Xinxin Zhu; James J Cimino; George Hripcsak
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

4.  Evaluation of methods to estimate missing days' supply within pharmacy data of the Clinical Practice Research Datalink (CPRD) and The Health Improvement Network (THIN).

Authors:  Kirsten J Lum; Craig W Newcomb; Jason A Roy; Dena M Carbonari; M Elle Saine; Serena Cardillo; Harshvinder Bhullar; Arlene M Gallagher; Vincent Lo Re
Journal:  Eur J Clin Pharmacol       Date:  2016-10-27       Impact factor: 2.953

Review 5.  Natural language processing systems for capturing and standardizing unstructured clinical information: A systematic review.

Authors:  Kory Kreimeyer; Matthew Foster; Abhishek Pandey; Nina Arya; Gwendolyn Halford; Sandra F Jones; Richard Forshee; Mark Walderhaug; Taxiarchis Botsis
Journal:  J Biomed Inform       Date:  2017-07-17       Impact factor: 6.317

6.  Risk of Out-of-Hospital Sudden Cardiac Death in Users of Domperidone, Proton Pump Inhibitors, or Metoclopramide: A Population-Based Nested Case-Control Study.

Authors:  Alejandro Arana; Catherine B Johannes; Lisa J McQuay; Cristina Varas-Lorenzo; Daniel Fife; Kenneth J Rothman
Journal:  Drug Saf       Date:  2015-12       Impact factor: 5.606

7.  Use of text-mining methods to improve efficiency in the calculation of drug exposure to support pharmacoepidemiology studies.

Authors:  Stuart McTaggart; Clifford Nangle; Jacqueline Caldwell; Samantha Alvarez-Madrazo; Helen Colhoun; Marion Bennie
Journal:  Int J Epidemiol       Date:  2018-04-01       Impact factor: 7.196

8.  The freetext matching algorithm: a computer program to extract diagnoses and causes of death from unstructured text in electronic health records.

Authors:  Anoop D Shah; Carlos Martinez; Harry Hemingway
Journal:  BMC Med Inform Decis Mak       Date:  2012-08-07       Impact factor: 2.796

9.  Identification of antithrombotic drugs related to total joint replacement using anonymised free-text notes: a search strategy in the Clinical Practice Research Datalink.

Authors:  Johannes Th Nielen; Bart J F van den Bemt; Annelies Boonen; Pieter C Dagnelie; Pieter J Emans; Nicole Veldhorst; Arief Lalmohamed; Tjeerd-Pieter van Staa; Frank de Vries
Journal:  BMJ Open       Date:  2015-11-30       Impact factor: 2.692

10.  Calcium channel blockers and cancer: a risk analysis using the UK Clinical Practice Research Datalink (CPRD).

Authors:  Lamiae Grimaldi-Bensouda; Olaf Klungel; Xavier Kurz; Mark C H de Groot; Ana S Maciel Afonso; Marie L de Bruin; Robert Reynolds; Michel Rossignol
Journal:  BMJ Open       Date:  2016-01-08       Impact factor: 2.692

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